Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00412 ATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAG 270 45.93 MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2055178 2057384 - CmaCh16G004120.1 Cma16g00412 311010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00412 89 Pfam Transcription elongation factor Elf1 like 2 78 IPR007808 -
Cma16g00412 89 Gene3D - 16 82 IPR038567 -
Cma16g00412 89 PANTHER UNCHARACTERIZED 1 89 IPR007808 -
Cma16g00412 89 SUPERFAMILY Zinc beta-ribbon 1 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00412 K25829 ELOF1, ELF1; transcription elongation factor 1 - sind:105165417 171.785
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00412 Cma-Chr16:2055178 Cma04g00558 Cma-Chr4:2828915 2.62E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g156 . . . . . . Bma10g00487 . Cmo16g00444 Cmo04g00594 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1043 Cone15ag1032 . . . . Blo07g00958 . Bda05g00778 . . Bpe03g00846 . . . . . . Cma16g00412 Car04g00529 Car16g00376 Cpe14g00346 Cpe01g00502 . . . . . . . Cla05g00991 Cam05g1082 Cec05g1090 Cco05g1084 Clacu05g1076 Cmu05g1026 Cre05g1100 . . Chy06g01173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007370 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 0 3 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00412 Cma_Chr16 FPKM 59.190304 60.391266 53.662006 53.699005 41.364487 46.384563 42.422657 38.291225 38.436604 39.340519