Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma16g00415 | ATGAGTCCAGCAAGTTGTTTTTGGACAATATTCAACCAACGGAAGGTGAAACATGTTTCAAGCAATGGAGAACAGGTACACGTAAAGACAGGAAAATCCAATGGTTCCCCTAATGGAAAGAGTGAAGATTTAGCTGCAACTCGAATTCAAAATGCATTTCGCTCATTTACGGCCAGAAAGATTGTACATGACTCGAAAGGGCCAGAGAGGTGCCAGGATCTAATTCAAGGTGAAACGGCTACAAAACAAGTGTTAAGCTTCATTCATTCATGGAGCAGAATGCAGCAAGAAATTAGAACACGTAGACTCTGTATGGTCGCAGAATATCGAGTCAAACAAAAGAAACAGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAAGTAGAATGGTGCGGTGGATCTGAAACAAAGGAGGAAATACTTTTCAAGATTCAGCATCGAGAAGAAGCTGCTGTGAGGAGGGAGCGTGCTATGGCGTATGCATTCTCTCATCAGTGGAGGGCCAATTCCATCTTAGATCTAAATCCGGCTTCATACAGCCTTGACAAAGAGAACTGGGGTTGGAGCTGGAAGGAGAGGTGGATTGCTGCTCGGCCATGGGAGATCCGAGCTAATACACATCCCACCATTCCAAAGAAGGTGCAGACGAAGCAAAGAAGCAAACTCAATGAAATAACATATCAACCGGGGTCTAAGGTCTCTACCTCAGCCAATCATTCTTTGTCAAACAAGGGGAGTTCAAAGGCTAGAAATTCATCTATGCCCAAATGA | 780 | 43.59 | MSPASCFWTIFNQRKVKHVSSNGEQVHVKTGKSNGSPNGKSEDLAATRIQNAFRSFTARKIVHDSKGPERCQDLIQGETATKQVLSFIHSWSRMQQEIRTRRLCMVAEYRVKQKKQENQLKLEAKIHELEVEWCGGSETKEEILFKIQHREEAAVRRERAMAYAFSHQWRANSILDLNPASYSLDKENWGWSWKERWIAARPWEIRANTHPTIPKKVQTKQRSKLNEITYQPGSKVSTSANHSLSNKGSSKARNSSMPK | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 2072511 | 2077072 | + | CmaCh16G004150.1 | Cma16g00415 | 311013 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma16g00415 | 259 | PANTHER | IQ-DOMAIN 5-RELATED | 20 | 251 | - | - | |
| Cma16g00415 | 259 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 20 | 251 | - | - | |
| Cma16g00415 | 259 | MobiDBLite | consensus disorder prediction | 211 | 259 | - | - | |
| Cma16g00415 | 259 | Coils | Coil | 112 | 132 | - | - | |
| Cma16g00415 | 259 | MobiDBLite | consensus disorder prediction | 21 | 41 | - | - | |
| Cma16g00415 | 259 | MobiDBLite | consensus disorder prediction | 212 | 259 | - | - | |
| Cma16g00415 | 259 | ProSiteProfiles | IQ motif profile. | 42 | 70 | IPR000048 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00203 | Cma-Chr7:940748 | Cma16g00415 | Cma-Chr16:2072511 | 7.30E-74 | dispersed | |
| Cma16g00415 | Cma-Chr16:2072511 | Cma04g02600 | Cma-Chr4:17780558 | 1.23E-32 | dispersed | |
| Cma16g00415 | Cma-Chr16:2072511 | Cma10g00857 | Cma-Chr10:4163007 | 4.59E-34 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma16g00415 | - | - | csv:101206595 | 439.113 |