Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00423 ATGGCGACTCAGCTCTTCTCTCGCTCGTTCCCTAAAACCCTAATTTTGACGTCTATGTTCTCTCGTTCCTTTCTCACTGCCAACCGAGCCGCCATCTCCGCCTCTTCTTGCTCCTCTTCCTCCCTTCTGCGCTATCTCCGTCCCCTCACTGCTATAGTCGGCGCTGATTTCCGCAGCGTCTCTCCGGCGTCGAGCGTGAGGGAGTTTGCTACCCGTGCGACTTCTTCCTCTCTCAACGACCCGAATCCTAACTGGTCTAATCGCCCTCCCAAGGAGACTATATTGCTCGATGGTTGTGATTTTGAGCACTGGCTCGTTGTCATGGAGAAGCCAGAGGGGGATCCCACCAGGGATGAGATTATCGACAGCTATATCAAAACGCTTGCCATGGTTATCGGAAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACCAGATGCTACTTTGCATTTGGGTGCCTTGTTTCTGAAGAACTTTCTTACAAGATCAAAGAGCTGCCTAAGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTTAAGAATAAAGATTATGGAGGGGAGCCTTTTATCAACGGACAAGCTGTTCCATATGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGCTCGAGCGAATGAGAGGAATAAGCGCAACGATAGACCTCGTAATTTTGACAGGTCAAGAAACTTCGAGAGGAGGAGGGAAAACATGCAAAGTAGAGAATTTCCAAATGCTTCACCAAATCAACCTACTGGACCAAACATGAGTCCGCCAGCTCCAAGCAATATGCCTCCCAACAATTTTAACGCCGGTATGCCGCCTCAGAACCGTGGAGGAATGCCCCAAGGCAACTATGCAGGAGGACCACCACCGCCGCCACCAAACAACTTCAGCGGACCACCGCCGCCACCAAACAACTTCAGCGGACCACCGCCGCCACCAAACAACTTCAGTGGACCACCGCCGCCACCAAACAACTTCAGCGGACCGCCGCCACCACCACACAACTATGCGGGAGGACCACCACCACCGCCACCAAACAACTTTGGCGGACCGCCTCCGCCACCACTGAACAACTATGCTGGACAACCACCACGCAACTATGCACCACCACCACCACCGCACTCCGGGGCAGCACCACCACACAACTATGGAGGGCCACAGCCAAACAACTATTGGGGAGGTCCACCGCCAACAAACAACTACGGTGGACCTTCAAACTCCGGCGGGCCACCTCCACAAAACAGCTATGGAGGAGGAGGGCAGCCTAATGCTGGTGGATGGTCCAGTAATGTGCATAACAAGCAACACGAGTAA 1329 52.52 MATQLFSRSFPKTLILTSMFSRSFLTANRAAISASSCSSSSLLRYLRPLTAIVGADFRSVSPASSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIKTLAMVIGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNARANERNKRNDRPRNFDRSRNFERRRENMQSREFPNASPNQPTGPNMSPPAPSNMPPNNFNAGMPPQNRGGMPQGNYAGGPPPPPPNNFSGPPPPPNNFSGPPPPPNNFSGPPPPPNNFSGPPPPPHNYAGGPPPPPPNNFGGPPPPPLNNYAGQPPRNYAPPPPPHSGAAPPHNYGGPQPNNYWGGPPPTNNYGGPSNSGGPPPQNSYGGGGQPNAGGWSSNVHNKQHE 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2113554 2116073 - CmaCh16G004230.1 Cma16g00423 311021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00423 442 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 12 427 IPR039206 GO:0016554
Cma16g00423 442 MobiDBLite consensus disorder prediction 289 384 - -
Cma16g00423 442 MobiDBLite consensus disorder prediction 215 243 - -
Cma16g00423 442 MobiDBLite consensus disorder prediction 254 268 - -
Cma16g00423 442 MobiDBLite consensus disorder prediction 215 442 - -
Cma16g00423 442 MobiDBLite consensus disorder prediction 399 442 - -
Cma16g00423 442 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL-LIKE 12 427 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00423 - - - cpep:111810342 548.125
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00570 Cma16g00423 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01306 Cma-Chr6:8637860 Cma16g00423 Cma-Chr16:2113554 5.76E-38 dispersed
Cma08g01241 Cma-Chr8:7597484 Cma16g00423 Cma-Chr16:2113554 3.74E-35 dispersed
Cma14g01830 Cma-Chr14:13071254 Cma16g00423 Cma-Chr16:2113554 4.80E-48 dispersed
Cma16g00423 Cma-Chr16:2113554 Cma17g00344 Cma-Chr17:1866218 3.09E-58 dispersed
Cma16g00423 Cma-Chr16:2113554 Cma04g00570 Cma-Chr4:2902890 6.91E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g129 . . . . Bpe09g00253 . Bma10g00477 . Cmo16g00455 Cmo04g00610 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1029 Cone15ag1014 . . . . Blo07g00964 Blo10g00738 Bda05g00787 . . Bpe03g00852 . . . . . Cma04g00570 Cma16g00423 Car04g00540 Car16g00387 Cpe14g00356 Cpe01g00515 . . . . . . . Cla07g00955 Cam07g1029 Cec07g1099 Cco07g1079 Clacu07g0998 Cmu07g0994 Cre07g1369 . . Chy07g00969 Cme07g01340
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002481 2 4 2 1 2 3 2 2 2 2 1 3 2 5 2 2 3 2 2 3 2 1 1 1 1 1 1 2 1 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00423 Cma_Chr16 FPKM 90.55677 95.661026 75.04895 76.472168 150.47261 141.407608 138.962372 100.115883 101.483284 88.084312