Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00426 ATGAAGATTCAGTGCAACGTCTGCGAGATGGCTGAGGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGATTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTTTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTTACTGGGGTGAAAGTGGCGCTTGAGCCAACTGATCCTGTTCCTTGTTCTTCCATGCCTAAGTCACATTCTCAAGTGAAACCTACTGAGACAAAAGTTAGACCTCTGTCTGAAAGGGAATTCTCGTTGCCTTCTCCTGGTGAACTCAGCAGATGCCTGTCTGTACAAGGTGGATCTGAGGACTTCATGGCAAATGGAACGTTCCATACCGGAGATACTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGACCTTATTAATCTGACTGGATTCAATCAGAACTATGGGTTTTTGGATAACGGATCATCCAAGGCTGATAGCGGCAAGCTCGGGGATTCTGATTCATCTCCAGTTTTAAGGGCTGCTGACATTGAGCTAGACGACAACGATGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATTTCCTGTTCTTCCGAAAAGGTTCAACATTGCTCATTTAATGGTAGATTCTTGAAACGAAGGAGGCAGTTCTAG 891 47.03 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSDSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVPCSSMPKSHSQVKPTETKVRPLSEREFSLPSPGELSRCLSVQGGSEDFMANGTFHTGDTVSGGFSQWQMDDLINLTGFNQNYGFLDNGSSKADSGKLGDSDSSPVLRAADIELDDNDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSFNGRFLKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2125173 2128774 - CmaCh16G004260.1 Cma16g00426 311024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00426 296 MobiDBLite consensus disorder prediction 115 129 - -
Cma16g00426 296 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 295 - -
Cma16g00426 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma16g00426 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma16g00426 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cma16g00426 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma16g00426 296 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma16g00426 296 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cma16g00426 296 CDD Bbox1_BBX-like 5 47 - -
Cma16g00426 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 295 - -
Cma16g00426 296 MobiDBLite consensus disorder prediction 113 145 - -
Cma16g00426 296 CDD Bbox1_BBX-like 56 99 - -
Cma16g00426 296 Gene3D Classic Zinc Finger 1 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00426 - - - bhj:120091143 556.599
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00659 Cma16g00426 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00283 Cma-Chr5:1210628 Cma16g00426 Cma-Chr16:2125173 5.29E-35 dispersed
Cma08g00194 Cma-Chr8:1096289 Cma16g00426 Cma-Chr16:2125173 7.11E-09 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma17g00607 Cma-Chr17:5142890 6.51E-09 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00009 CST 1 379 Orphan Transcription Factor Family AT5G61850 66.6 4.0e-122 435.6
Cma11g00003 CST 1 330 Orphan Transcription Factor Family AT5G61850 62.0 5.2e-114 408.7
Cma17g00607 . 1 167 Orphan Transcription Factor Family AT1G06040 67.8 1.8e-60 229.6
Cma08g00194 . 1 161 Orphan Transcription Factor Family AT1G06040 69.0 1.2e-59 226.9
Cma16g00426 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.5e-38 156.8
Cma04g00659 CST 1 109 Orphan Transcription Factor Family AT1G06040 67.9 3.3e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36531 PF00643 zf-B_box 3.60E-07 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00426 Cma_Chr16 FPKM 4.654568 4.576577 26.004524 26.932316 17.962578 15.393723 16.374332 23.830107 24.136045 27.898371