Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00426 ATGAAGATTCAGTGCAACGTCTGCGAGATGGCTGAGGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCTTGCGATGAGAAGATTCATGCGGCCAACAAGCTTGCAAGCAAGCACCAGAGAGTTCCTCTCTCTGATTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCTAGTGGCTATATCTTTTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCTATACACACAGCAAATACTTATGTAACTGGTCATCAGCGCTTTCTGCTTACTGGGGTGAAAGTGGCGCTTGAGCCAACTGATCCTGTTCCTTGTTCTTCCATGCCTAAGTCACATTCTCAAGTGAAACCTACTGAGACAAAAGTTAGACCTCTGTCTGAAAGGGAATTCTCGTTGCCTTCTCCTGGTGAACTCAGCAGATGCCTGTCTGTACAAGGTGGATCTGAGGACTTCATGGCAAATGGAACGTTCCATACCGGAGATACTGTTTCTGGTGGCTTTTCACAATGGCAAATGGATGACCTTATTAATCTGACTGGATTCAATCAGAACTATGGGTTTTTGGATAACGGATCATCCAAGGCTGATAGCGGCAAGCTCGGGGATTCTGATTCATCTCCAGTTTTAAGGGCTGCTGACATTGAGCTAGACGACAACGATGAATGCTCGGGTCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATTTCCTGTTCTTCCGAAAAGGTTCAACATTGCTCATTTAATGGTAGATTCTTGAAACGAAGGAGGCAGTTCTAG 891 47.03 MKIQCNVCEMAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSDSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVTGHQRFLLTGVKVALEPTDPVPCSSMPKSHSQVKPTETKVRPLSEREFSLPSPGELSRCLSVQGGSEDFMANGTFHTGDTVSGGFSQWQMDDLINLTGFNQNYGFLDNGSSKADSGKLGDSDSSPVLRAADIELDDNDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISCSSEKVQHCSFNGRFLKRRRQF 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2125173 2128774 - CmaCh16G004260.1 Cma16g00426 311024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00426 296 MobiDBLite consensus disorder prediction 115 129 - -
Cma16g00426 296 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 295 - -
Cma16g00426 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cma16g00426 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma16g00426 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cma16g00426 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma16g00426 296 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cma16g00426 296 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cma16g00426 296 CDD Bbox1_BBX-like 5 47 - -
Cma16g00426 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 295 - -
Cma16g00426 296 MobiDBLite consensus disorder prediction 113 145 - -
Cma16g00426 296 CDD Bbox1_BBX-like 56 99 - -
Cma16g00426 296 Gene3D Classic Zinc Finger 1 92 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00659 Cma16g00426 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00283 Cma-Chr5:1210628 Cma16g00426 Cma-Chr16:2125173 5.29E-35 dispersed
Cma08g00194 Cma-Chr8:1096289 Cma16g00426 Cma-Chr16:2125173 7.11E-09 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma17g00607 Cma-Chr17:5142890 6.51E-09 dispersed
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
Cma16g00426 Cma-Chr16:2125173 Cma04g00659 Cma-Chr4:3365505 8.62E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36531 PF00643 zf-B_box 3.60E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00426 - - bhj:120091143 556.599