Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00431 ATGACGTCGGGGACGAGACTACCAACATGGAGGGAGCGGGAGAACAACAAGAGAAGGGAGAGAAGGAGAAGAGCTATCGCAGCAAAGATCTTTGCTGGACTCAGGATGTATGGGAACTACAAGCTTCCCAAACATTGCGACAACAATGAGGTCCTTAAAGCGCTCTGCGATGAGGCGGGATGGACCGTCGAACTTGATGGTACCACTTACCGTAAGGGATGCAAGCCAATTCAACGTATGGATGTGGTTGGTGGGTCGGCAGCTGCAAGCCCGTTCGCATCTCACCAACCAAGTCCTTGTGCTTCCTTCAATCCAAGCCCCGGTTCATCTTCATTTCCAAGTCCAGCATCATCTTCATATGTTGCTAATCCAAATGCCGATGGCAGTTTTCTAATCCCCTGGCTCAGGAACCTTTCATCGTCATCATCTTCAGCATCCTCGTCTAAACTCCCCAATCTCCATATTCATGGAGGTTCCATCAGTGCTCCTGTTACTCCTCCTTTGAGTTCCCCAACTGCTAGAACGCCCCGACCCAAAGCTGACTGGGAAGACCAATCTGTCCTACCAGGATGGAATGCACAATACTATTCCTCCCTTCCATCTTCTACTCCACCAAGTCCTGGACGTCACGTTGTTCCCAATCCAGAATGGTTCGCTGGCCTTAGAATTCCTCAGGGTGGACCCAATTCTCCAACATTTAGTCTTGTTTCTACAAACCCATTTGGTTTCAAGGAAGCAGCAATGACTGGTGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCTCCTGCCATTGCCGCAGGCTCCGATCACACTGCAGATATTCCAATGTCAGAAGTGATCTCTGAAGAGTTCGCATTTGGAAGCAACACAGCAGGAATAGTGAAGCCATGGGAAGGAGAACGAATTCACGAGGAGTGTGGCTCAGATGACCTAGAGCTATCTCTTGGGAACTCAAGAACCAGATAA 978 49.9 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVELDGTTYRKGCKPIQRMDVVGGSAAASPFASHQPSPCASFNPSPGSSSFPSPASSSYVANPNADGSFLIPWLRNLSSSSSSASSSKLPNLHIHGGSISAPVTPPLSSPTARTPRPKADWEDQSVLPGWNAQYYSSLPSSTPPSPGRHVVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMTGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISEEFAFGSNTAGIVKPWEGERIHEECGSDDLELSLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2148810 2151414 - CmaCh16G004310.1 Cma16g00431 311029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00431 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cma16g00431 325 MobiDBLite consensus disorder prediction 1 20 - -
Cma16g00431 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 325 - -
Cma16g00431 325 MobiDBLite consensus disorder prediction 91 118 - -
Cma16g00431 325 MobiDBLite consensus disorder prediction 157 184 - -
Cma16g00431 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cma16g00431 325 MobiDBLite consensus disorder prediction 88 118 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00580 Cma-Chr13:5806691 Cma16g00431 Cma-Chr16:2148810 3.64E-126 dispersed
Cma16g00431 Cma-Chr16:2148810 Cma18g00433 Cma-Chr18:2401598 1.25E-114 dispersed
Cma16g00431 Cma-Chr16:2148810 Cma04g00664 Cma-Chr4:3386282 2.66E-176 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36532 PF05687 BES1_N 2.80E-63 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00431 - - csv:101210002 567.0