Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00434 ATGGCGGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGATTCCGGCGTCGGCAAGTCCAATTTGCTGTCCAGATTTACTAAGAACGAGTTCAACCTCGAGTCCAAATCCACCATTGGTGTAGAGTTCGCCACCAGGACTTTGAAGGTCGATAGTAAAGTTATTAAAGCTCAGATTTGGGACACTGCTGGCCAAGAAAGGTACCGTGCCATCACCAGTGCCTACTACCGTGGGGCAGTCGGTGCACTCCTTGTATATGATGTCACTCGTCATGCAACATTCGAGAACGTCGATCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATCGTTGTGATGCTTGTTGGAAACAAATCCGATCTTCGCCACCTTGTTGCTGTTCCAACCGAAGATGGAAAGTCGTATGCTGAGAAGGAATCACTGTATTTCATAGAAACCTCTGCACTAGAAGCAGTCAATGTCGAGAAAGCATTCGCTGAGGTCCTAACTCAGATCTATCACATTGTAAGCAAGAAGGCGGTTGAAGGCGGAGAAAATGGCTCTGCTACCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAAAGACGAATCGGGTTTAAACAGAATCAAATATGGTTATGAAGAAAAAGGAAGATACATATATATCCCCAAGACGTTCAATCTTGCTGCATTACAGAAAGAGGAGTACCTTAGCCACATGATTGACACACACGGCCTCCCGCCCAATTTTGTTCTCTTCAATTTTCCCTCTCGATTTCAGACCGTCGAAACCCCATCGGAGGAACTCGGCGTTTCAATTCTCTACTGTTCGACAAATCTCACTTCTTTTGAGCTATCAAAATCCATGAGAATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGCGTAGTAAGGGACTGCGTGAGCAAGCATCTCTACTCATCCGCCATTTTCTTCGCTGACAAAGTTGCCGCTTTCACTGAGGACCCTGCCGACATTTACATGCAGGCGCAGGCCCTCTTTCTTGGCCGCCATTTTCGTCGTGCGTTTCACCTCCTTAATGCCTCCAAGATCGTCCTCCGCGATCCGCGGTTTCGCTACCTTGCTGCCAAGTGTCTCGAGGAATTGAAGGAGTGGGACCAATGCCTCATGATGCTTGGTGATGCCAAAGTGGACGAGCATGGCAATGTTCTTGATAATAAGGATCACAGTGGCATGTACCTCGACAAAGATTCCGAGGATCGTGAGATTAATATAGCCGCAGCTACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAATCGCACTCAGGCTCGACTTTGGTATAAAGCTGCTATCAAAGCTGACCCTCTATGTTATGAGGTAAATATGTTTCTTTGCCGAACTTTGGTATTGCTGAACGTATTCAGCTTAGCGTACTGTTACCATTCTTAA 1446 46.61 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDSKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVVMLVGNKSDLRHLVAVPTEDGKSYAEKESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKKAVEGGENGSATSVPAQGEKINIKDESGLNRIKYGYEEKGRYIYIPKTFNLAALQKEEYLSHMIDTHGLPPNFVLFNFPSRFQTVETPSEELGVSILYCSTNLTSFELSKSMRMREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFRYLAAKCLEELKEWDQCLMMLGDAKVDEHGNVLDNKDHSGMYLDKDSEDREINIAAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEVNMFLCRTLVLLNVFSLAYCYHS 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2165009 2170144 + CmaCh16G004340.1 Cma16g00434 311032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00434 481 ProSiteProfiles small GTPase Rho family profile. 7 175 - -
Cma16g00434 481 SMART rho_sub_3 16 173 IPR001806 GO:0003924|GO:0005525
Cma16g00434 481 SMART ran_sub_2 19 212 - -
Cma16g00434 481 Gene3D - 6 207 IPR027417 -
Cma16g00434 481 PRINTS Transforming protein P21 ras signature 14 35 - -
Cma16g00434 481 PRINTS Transforming protein P21 ras signature 152 174 - -
Cma16g00434 481 PRINTS Transforming protein P21 ras signature 117 130 - -
Cma16g00434 481 PRINTS Transforming protein P21 ras signature 55 77 - -
Cma16g00434 481 PRINTS Transforming protein P21 ras signature 37 53 - -
Cma16g00434 481 SMART rab_sub_5 14 177 - -
Cma16g00434 481 Pfam Anaphase-promoting complex, cyclosome, subunit 3 312 390 - -
Cma16g00434 481 SUPERFAMILY TPR-like 331 471 IPR011990 GO:0005515
Cma16g00434 481 ProSiteProfiles small GTPase Rab1 family profile. 9 226 - -
Cma16g00434 481 ProSiteProfiles small GTPase Ras family profile. 2 277 IPR001806 GO:0003924|GO:0005525
Cma16g00434 481 SMART ras_sub_4 11 177 - -
Cma16g00434 481 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Cma16g00434 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Cma16g00434 481 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Cma16g00434 481 Gene3D Tetratricopeptide repeat domain 280 474 IPR011990 GO:0005515
Cma16g00434 481 CDD Rab11_like 11 175 - -
Cma16g00434 481 PANTHER RAS-RELATED PROTEIN RABA1B 1 213 - -
Cma16g00434 481 PANTHER DRAB5-RELATED 1 213 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00434 K07904 RAB11A; Ras-related protein Rab-11A - csv:101210988 410.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00671 Cma16g00434 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00672 Cma-Chr4:3421256 Cma16g00434 Cma-Chr16:2165009 3.56E-121 dispersed
Cma13g00584 Cma-Chr13:5830138 Cma16g00434 Cma-Chr16:2165009 8.64E-125 dispersed
Cma16g00434 Cma-Chr16:2165009 Cma18g00430 Cma-Chr18:2369126 4.03E-118 dispersed
Cma16g00434 Cma-Chr16:2165009 Cma04g00671 Cma-Chr4:3417776 3.59E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g98 Blo03g00702 Blo03g01562 . Bda09g00544 . Bpe08g00992 . . Cmo16g00469 Cmo04g00717 . . . Car09g00748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00443 . . Bma14g00271 . . Cmo09g00827 Cma04g00671 Cma16g00434 . . Cpe14g00367 Cpe01g00605 . . . . . . . . . . . . . . . Csa04g00810 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0045293 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00434 Cma_Chr16 FPKM 16.667315 18.706322 15.519855 15.448545 23.594854 28.612276 24.004253 10.773804 10.386352 11.510672