Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00437 ATGAGCTGTGAGGAAGGCATTATGGGTGGTGATAAGTACAGAGCTTCGTTGCATTTGGAGGGTCCTACAGTTGAATGGAGGATGGGAAAGCCCCCAAATTATGAAGCTGTGAACAAGCTGTTTGAAGATGGAAGAACAAAGGTGTGGCCAAAAGGATCTGTGGAAGAACAAGTGCAGAATATTATAAAATCATTGCAAATGGAGTTTGCTTACAAGACTAGACCACAAGATTTCAAGAACATAAACCTTCACAATTTCTTATGTTCTATCAATGGAAGAACAGTCTCATGTGAAGAAGCATTGAAGCTTGGAAGCTTCAACACATTTATGAAGAATCCTTTACCACAGGAATTCCATTACTTCAAACCACAAGAAGAGACATCTGAGTCGACTCATAATGACTTCAAGACATGTTTTCCAAGAGGGTTTGCATGGGAAGTCATAGAGGTTTATTCTCCTCCTCCTTTGATTGCCTACAAATTTAGGCATTGGGGTTTCTTTGAAGGACCTTACAAATCCCATTCCCCAACCGGCGAAATGGTCGAATTCTTCGGCATGGGAATTCTCAAGGTGGATTCATCATGGAAGATTGAAGAAGGTCATGTGTTCTTTGATCCAGCTGAGCTATTTGGAGGTCTTTTGAAGGGCAAAAAAACAGCTGATTCGTCTGCCTCTGCCTGTCCACTCTTTGATCAGCTGAAGTAG 705 41.7 MSCEEGIMGGDKYRASLHLEGPTVEWRMGKPPNYEAVNKLFEDGRTKVWPKGSVEEQVQNIIKSLQMEFAYKTRPQDFKNINLHNFLCSINGRTVSCEEALKLGSFNTFMKNPLPQEFHYFKPQEETSESTHNDFKTCFPRGFAWEVIEVYSPPPLIAYKFRHWGFFEGPYKSHSPTGEMVEFFGMGILKVDSSWKIEEGHVFFDPAELFGGLLKGKKTADSSASACPLFDQLK 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2177971 2180891 - CmaCh16G004370.1 Cma16g00437 311035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00437 234 Gene3D - 116 214 - -
Cma16g00437 234 SUPERFAMILY NTF2-like 132 210 IPR032710 -
Cma16g00437 234 PANTHER PATHOGENESIS-RELATED FAMILY PROTEIN 8 231 - -
Cma16g00437 234 PANTHER PATHOGEN-RELATED PROTEIN-LIKE 8 231 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00437 - - - cmax:111482670 498.049
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00673 Cma16g00437 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00620 Cma-Chr15:2925968 Cma16g00437 Cma-Chr16:2177971 6.02E-75 dispersed
Cma16g00437 Cma-Chr16:2177971 Cma16g00439 Cma-Chr16:2187370 1.12E-110 dispersed
Cma16g00436 Cma-Chr16:2174892 Cma16g00437 Cma-Chr16:2177971 1.87E-125 tandem
Cma16g00437 Cma-Chr16:2177971 Cma16g00438 Cma-Chr16:2183610 3.55E-112 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g100 . . . . . . Bma10g00455 . Cmo16g00472 Cmo04g00719 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00673 Cma16g00437 . . Cpe14g00369 Cpe01g00607 . . . . . . . . . . . . . . . Csa04g00808 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000812 1 9 3 1 1 4 0 4 4 2 3 4 5 2 2 5 4 0 1 4 2 1 1 2 2 5 4 8 5 1 90
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00437 Cma_Chr16 FPKM 0.0 0.0 9.29596 9.14219 42.549549 44.695343 49.535713 0.0 0.0 0.0