Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00440 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAAGTTTTCTTCCAAGTCATCGTTTAGAGATCCGAATGGTGTAGAGGGAATTGTTCGAGTGGCCGTGTCGGAGGTCGAAGGTGCCTCCGGTCAGCCCGGCGGGACTGACGGCGACTTGATGCAGGGTGAGTCTTCTTGGTCTTCTATGCTACCGGAGCTTCTCCGGGAGATTATTCAGCGGGTTGAGGCTTCTGAGGACGGTTGGCCCAACCGCCAAAACGTTGTTTCCTGTGCTTGTGTCTGTAAACGCTGGCGGGATATTACTAAGGAGATCGCCAGGGGTACCCCTCATTCCGGGAAGATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGCGATCTTCCACATCAATGTCTTATAAAACGGAACAAGAAGACTTCAACGTTTTACCTTTACCTTGCCCTTACACCATCATTTACAGATAAGGGAAAGTTCCTCTTAGCTGCACGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGAATTATCACAAGGAAACAATGCATATGTGGGCAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACTATTTATGATAGCCAACCACCACATAATGGTGCAAAGCCATCGAGCAGTAAATCGAGCCGCCGCTTTGCAAGCAAGCAAATCAGCCCACAAGTGTCTGCAGGTAACTTTGAGGTTGGGCAAGTCTCCTACAAATTTAATCTTTTGAAATCAAGAGGTCCGAGGAGAATGATGTGCTCTCTGAAGTGCCCAGTATCAGAAGAATCTGTAACCAGCAAACCCTGCGAGAACTTGATGATGAAGAAATCTGCGTCTTTTTCTCCCTCATCAGGGTCGACAATCTTACGAAACAAGGCTCCTAGGTGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCATCTGTTAAAAACTTTCAACTTGTTGCTAGTATTGACCATAGCCAGCCAGGAGGAGGTAAAGGGGACGAAGAAACAGTCCTACTACAGTTCGGAAAGGTAGGCGACGATACCTTTACTATGGATTATAGACAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTCGGCACGAAGTTGGCATGCGAGTAG 1161 47.29 MSLRRSFLSRKFSSKSSFRDPNGVEGIVRVAVSEVEGASGQPGGTDGDLMQGESSWSSMLPELLREIIQRVEASEDGWPNRQNVVSCACVCKRWRDITKEIARGTPHSGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEELSQGNNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMMCSLKCPVSEESVTSKPCENLMMKKSASFSPSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVASIDHSQPGGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2194491 2198694 - CmaCh16G004400.1 Cma16g00440 311038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00440 386 Gene3D Tubby Protein; Chain A 112 386 IPR025659 -
Cma16g00440 386 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cma16g00440 386 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cma16g00440 386 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cma16g00440 386 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Cma16g00440 386 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Cma16g00440 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cma16g00440 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Cma16g00440 386 SUPERFAMILY F-box domain 53 99 IPR036047 GO:0005515
Cma16g00440 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Cma16g00440 386 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Cma16g00440 386 PANTHER TUBBY-RELATED 1 386 - -
Cma16g00440 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 386 - -
Cma16g00440 386 Pfam Tub family 117 381 IPR000007 -
Cma16g00440 386 Pfam F-box domain 56 101 IPR001810 GO:0005515
Cma16g00440 386 MobiDBLite consensus disorder prediction 205 225 - -
Cma16g00440 386 Gene3D - 51 102 - -
Cma16g00440 386 SUPERFAMILY Tubby C-terminal domain-like 107 386 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00575 Cma16g00440 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00440 Cma-Chr16:2194491 Cma08g01203 Cma-Chr8:7397977 1.17E-132 dispersed
Cma16g00440 Cma-Chr16:2194491 Cma04g00575 Cma-Chr4:2925521 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36533 PF01167 Tub 2.40E-103 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00440 K19600 - csv:101211968 637.106