Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00441 ATGAGTAGTTTGGCATCGCCGGCCAGTGTTTGCACCTCCTTGGGATGGAAATCTTCGAGTTTTTTAGTCCACTCGGGCCTCAAATCCTCTAATTCCTTTAAATTGCTTGTTTCCAGGAGACGGGTCTCCGATAAACTTATCTCTGTTACTTGTTCATCTTCCTTATCTGATCCTCCACTCTTGGTAAAGGCAGCAAGAGGGGATCCTGTTAGTCGCCCACCAGCATGGATGATGCGTCAAGCAGGAAGGTATATGGCCGTTTACAGAAAACTTGCAGAGAAATATCCATCTTTCAGAGAGAGATCAGAAACAACTGATCTCATTGTAGAAATTTCATTGCAGCCTTGGGAGGCTTTCCATCCTGATGGAGTTATAATTTTTTCCGACATCCTAACCCCTCTACCGGCATTTGGCGTTCCTTTTGACATAGAAGACGTACGAGGCCCTATTATTCACTCGCCTATTCGCTCCGAAGAGGGATTGAAAGCTCTTCATCCCCTTGACCTTGAGAAACTCAACTTTGTGGGGGAGTCACTTAAACTGCTACGCAAGGAGGTTGAAGGCAGTGCTGCTGTCTTGGGTTTTGTAGGAGCTCCTTGGACGATTGCAACGTATATTGTGGAAGGTGGTACGACACGAACGTATACGACGATTAAGAGAATGTGCCACACAGCACCACATGTGTTGAAGACTCTCCTCTCTCATTTGACACAGGCAATATCAGAATATATTGTTTTCCAAATAGAACATGGAGCTCATTGCATACAAATATTTGACTCATGGGGTGGACAGTTGCCACCTGATATGTGGGAATCCTGGTCAAAGCCGTATATTCAGAAGATTGTGAGTACAGTAAGGAGCAAGTGCCCTGAAACACCACTTGTTCTCTACATCAATGGAAATGGCGGTCTTCTAGAGCGAATGAAAGGAACAGGAGTCGACGTTATCGGGCTTGACTGGACAGTAGACATGGCTGACGGAAGGAAGAGATTAGGAGCTGATATCAGTGTACAAGGAAATGTTGACCCTGCTTATCTGTTTTCTACTCTTCCTGCTCTATCTGAAGAAATTCAAAGGGTTGTGAGATGTGCAGGACCAAGAGGACACATTCTAAACCTCGGGCACGGCGTCCTTGTCGGTACACCAGAAGAAGCAGTCGCACATTTCTTCGATGTTGCTAGAAGTTTGAACTTTGATACTCTGTCTCAAGATTTGGCAGCCCAAGAACACAAATTGGTAGCATAG 1245 45.38 MSSLASPASVCTSLGWKSSSFLVHSGLKSSNSFKLLVSRRRVSDKLISVTCSSSLSDPPLLVKAARGDPVSRPPAWMMRQAGRYMAVYRKLAEKYPSFRERSETTDLIVEISLQPWEAFHPDGVIIFSDILTPLPAFGVPFDIEDVRGPIIHSPIRSEEGLKALHPLDLEKLNFVGESLKLLRKEVEGSAAVLGFVGAPWTIATYIVEGGTTRTYTTIKRMCHTAPHVLKTLLSHLTQAISEYIVFQIEHGAHCIQIFDSWGGQLPPDMWESWSKPYIQKIVSTVRSKCPETPLVLYINGNGGLLERMKGTGVDVIGLDWTVDMADGRKRLGADISVQGNVDPAYLFSTLPALSEEIQRVVRCAGPRGHILNLGHGVLVGTPEEAVAHFFDVARSLNFDTLSQDLAAQEHKLVA 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2199104 2202801 + CmaCh16G004410.1 Cma16g00441 311039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00441 414 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 193 209 IPR000257 GO:0004853|GO:0006779
Cma16g00441 414 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 24 410 - -
Cma16g00441 414 Hamap Uroporphyrinogen decarboxylase [hemE]. 57 397 IPR006361 GO:0004853|GO:0006779
Cma16g00441 414 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 24 410 - -
Cma16g00441 414 Pfam Uroporphyrinogen decarboxylase (URO-D) 60 395 IPR000257 GO:0004853|GO:0006779
Cma16g00441 414 TIGRFAM hemE: uroporphyrinogen decarboxylase 61 394 IPR006361 GO:0004853|GO:0006779
Cma16g00441 414 CDD URO-D 63 395 IPR006361 GO:0004853|GO:0006779
Cma16g00441 414 Gene3D - 53 398 IPR038071 -
Cma16g00441 414 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 74 83 IPR000257 GO:0004853|GO:0006779
Cma16g00441 414 SUPERFAMILY UROD/MetE-like 60 397 IPR038071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00441 K01599 hemE, UROD; uroporphyrinogen decarboxylase [EC:4.1.1.37] - csv:101212208 782.711
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00819 Cma16g00441 CCT
Cma01g01247 Cma16g00441 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01077 Cma-Chr4:5552010 Cma16g00441 Cma-Chr16:2199104 1.41E-127 dispersed
Cma16g00441 Cma-Chr16:2199104 Cma04g00115 Cma-Chr4:558088 1.08E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g112 . . . . Bpe09g00260 Bpe08g00979 . Bma13g00929 Cmo16g00476 . Cma01g01247 Cma09g00819 Car01g01069 Car09g00736 Sed04g2437 . Cpe02g00669 Bhi09g03509 Tan01g4322 Cmetu07g0523 . Hepe01g1439 Mch11g1011 . Cla11g01712 Cam11g1780 Cec11g1801 Cco11g1806 Clacu11g1939 Cmu11g1750 Cre11g2158 . . . . Lsi04g02014 Csa04g02287 Chy07g00024 Cme07g00538 Blo07g00966 Blo10g00733 . . . . Bma07g01138 . . Cmo01g01303 Cmo09g00814 . Cma16g00441 . . Cpe14g00371 . . . . . . . . . . . . . . . . Csa04g00805 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011363 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00441 Cma_Chr16 FPKM 8.396541 10.576306 13.741748 14.292878 96.457497 91.511177 96.059891 20.550222 20.676739 21.041796