Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00442 ATGGCGAACAGTAATCTTCCCCGAAGAATCATCAAGGAAACTCAGCGTCTCCTTAGTGAACCGGCCCCTGGGATTAGTGCCTCGCCGTCAGAAGATAATATGCGATATTTTAACGTGATGATCCTTGGCCCGACCCAGTCACCCTATGAAGGAGGAGTTTTCAAGTTGGAGCTATTTTTACCCGAAGAATATCCTATGGCTGCTCCCAAGGTTCGATTTCTCACAAAGATTTATCATCCAAATATTGATAAGCTTGGGAGGATATGCCTTGATATTCTGAAAGACAAATGGAGTCCAGCTCTACAGATACGAACTGTACTTTTGAGTATTCAAGCTCTTCTGAGTGCTCCAAACCCAGATGATCCACTTTCCGAGAACATTGCCAAACATTGGAAATCGAATGAGGTCGAAGCTGTTGAAACAGGTGAGTTGCAAAGGAATGGACTCGATTATACGCAAGTGGTGCTTAAAGAAGGGAAACTGCGGAAGCCTTTTATCTCTTCGGAGTCTGTACCCCCATACTATGTATGA 531 44.26 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEVEAVETGELQRNGLDYTQVVLKEGKLRKPFISSESVPPYYV 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2204068 2208159 - CmaCh16G004420.1 Cma16g00442 311040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00442 176 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Cma16g00442 176 SUPERFAMILY UBC-like 7 136 IPR016135 -
Cma16g00442 176 CDD UBCc 7 144 IPR000608 -
Cma16g00442 176 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 139 - -
Cma16g00442 176 Pfam Ubiquitin-conjugating enzyme 9 137 IPR000608 -
Cma16g00442 176 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Cma16g00442 176 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 139 - -
Cma16g00442 176 SMART ubc_7 8 151 - -
Cma16g00442 176 Gene3D Ubiquitin Conjugating Enzyme 1 147 IPR016135 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00442 K10580 UBE2N, BLU, UBC13; ubiquitin-conjugating enzyme E2 N [EC:2.3.2.23] - sly:101266538 286.574
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00573 Cma16g00442 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00573 Cma-Chr4:2920426 Cma16g00442 Cma-Chr16:2204068 1.42E-103 dispersed
Cma16g00442 Cma-Chr16:2204068 Cma01g00921 Cma-Chr1:5601150 5.45E-42 dispersed
Cma16g00442 Cma-Chr16:2204068 Cma19g00737 Cma-Chr19:7384133 1.09E-42 transposed
Cma16g00442 Cma-Chr16:2204068 Cma02g00682 Cma-Chr2:4175665 2.19E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g121 . . . . . . Bma10g00474 . Cmo16g00477 Cmo04g00613 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00965 Blo10g00734 . Bda12g00818 . Bpe03g00854 . . . . . Cma04g00573 Cma16g00442 Car04g00543 . Cpe14g00372 Cpe01g00518 . . . . . . . . . . . . . . Lsi05g00796 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006747 0 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00442 Cma_Chr16 FPKM 84.691307 103.169762 117.937332 127.587746 123.289299 99.968758 118.253891 172.312347 156.533096 171.224075