Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00443 ATGAGATCGCCATTGTTGACGCCTTTTCTGATCTCTTTCTTTTTCCTGTTCTTTTCTTTCTCTCTTGCTCTCGTGCCTGCTAACGAGACCTTCAAGTTCGTCAATGAAGGCGAGTTTGGTGAATTCATCATCGAGTACGACGGCACCTACAGACCTCTCAGCATCTTCAGATTTCCATTTCAGTTATCATTCTACAACACGACGCCGAACGCTTACACGCTCGCTCTTCGAATTTCGATTCGTCGCTCCGAATCGGCGATACGGTGGGTTTGGGAGGCCAATCGCGGCCGTCCGGTGCGCGAAAATGCTACATTCTCTCTCTCCACCAACGGAAACCTAGTTCTCGCTGAAGCCGACGGCACTGTTGTATGGCAATCGAACACAGCCAACAAGGGCGTTGTTGGATTCGAATTGCTTCCGAGTGGCAACATGGTGTTGTTCGACTCCAATGGCAAATTCCTCTGGCAGAGCTTCGATTCGCCGACGGACACACTCCTTGTCGGCCAATCGCTCCGTCTCGGCGGGCCAACGAAGCTAGTAAGCCGCGCATCGGAGGTAATGAACGTCAATGGACCTTACAGCCTTGTAATGGAACGAAAAGCCCTATCTCTTTACTACAAAAGCCCTAACTCTCCAAAACCGATGCGGTACTACTCATCCACAGACATGCTCTCAGTCCGGAAAGGCGTTCTCGCAAATATCACACTAAACGCCGCCGTAGATCCAGATCAAGGATTCGCCACCGAATTAACACTGAACTACGAGACCGGCTCGACTGAGAGCGGCGGTCCAATTCTAACCCGGCCGAAGTACAACAGCACACTAACATTCCTCCGATTAGGAATCGACGGCAACCTCCGCCTGATCACATACAACGACAAAGTCGATTGGGGCCCGTCGGAGATTTCGTTCACACTCTTCGATAGGGATTCGACTTGGGAGAACGAATGCCAATGGCCAGAGCGGTGCGGACAGTTCGGGTTGTGCGAGGACAACCAGTGCGTAGCCTGTCCAACAGAGAACGGACTGGCAGGATGGAGCAAGACCTGCGCGCCGAAGAAGGTAAGTTCCTGCGATCCCAAAAGCTTCCATTACTATAAACTAGTCGGTGTGGATCATTTCTTGACAAAGTACAACAAAGGAGAAGGGCCAATGGGACAGAAGGAGTGTGAGAAGAAGTGCAATTTGGATTGCAAATGTTTGGGATATTTTTACCAAACCAAAGGGTCGCTATGTTGGGTTGCAAATGAGCTGAAAACTTTGATAAAAGTGGCCAATTCCACTCATTTGGGCTTCATCAAAACACCCAATAAGTAG 1317 50.04 MRSPLLTPFLISFFFLFFSFSLALVPANETFKFVNEGEFGEFIIEYDGTYRPLSIFRFPFQLSFYNTTPNAYTLALRISIRRSESAIRWVWEANRGRPVRENATFSLSTNGNLVLAEADGTVVWQSNTANKGVVGFELLPSGNMVLFDSNGKFLWQSFDSPTDTLLVGQSLRLGGPTKLVSRASEVMNVNGPYSLVMERKALSLYYKSPNSPKPMRYYSSTDMLSVRKGVLANITLNAAVDPDQGFATELTLNYETGSTESGGPILTRPKYNSTLTFLRLGIDGNLRLITYNDKVDWGPSEISFTLFDRDSTWENECQWPERCGQFGLCEDNQCVACPTENGLAGWSKTCAPKKVSSCDPKSFHYYKLVGVDHFLTKYNKGEGPMGQKECEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVANSTHLGFIKTPNK 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2211987 2213303 + CmaCh16G004430.1 Cma16g00443 311041

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00443 438 CDD B_lectin 45 161 IPR001480 -
Cma16g00443 438 Pfam D-mannose binding lectin 90 174 IPR001480 -
Cma16g00443 438 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 13 438 - -
Cma16g00443 438 Gene3D - 55 160 IPR036426 -
Cma16g00443 438 PIRSF SLG 1 438 IPR035446 -
Cma16g00443 438 CDD PAN_AP_plant 356 436 - -
Cma16g00443 438 ProSiteProfiles Bulb-type lectin domain profile. 41 159 IPR001480 -
Cma16g00443 438 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 208 IPR036426 -
Cma16g00443 438 PANTHER - 13 438 - -
Cma16g00443 438 SMART blect_4 44 161 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00443 - - - csv:101212696 724.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00816 Cma16g00443 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00816 Cma-Chr9:4013502 Cma16g00443 Cma-Chr16:2211987 3.87E-128 dispersed
Cma14g00025 Cma-Chr14:104483 Cma16g00443 Cma-Chr16:2211987 3.70E-17 dispersed
Cma16g00443 Cma-Chr16:2211987 Cma14g00110 Cma-Chr14:476812 1.13E-29 dispersed
Cma16g00443 Cma-Chr16:2211987 Cma06g00273 Cma-Chr6:1336180 1.37E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004202 2 4 3 2 3 1 0 1 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00443 Cma_Chr16 FPKM 158.061508 169.856384 856.514893 848.995178 261.52002 274.920563 253.459198 76.715508 73.328583 65.855888