Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00445 ATGTTCTTCATGGACTTGCCAATGAAGAGGCCTATTTCAGGTGATCGGAGAACCCAATACAGAATAGAAGCTAGAAATCTTTGTTACAAAATAAGTGAGAGTTTTGATGGGTTGAATTGGTTCTGTGGTGGAGGCAGCTCAAAGAGAGGTCCAAAGTTCATCTTAAAAAATGTGAACTGTGAGGCACGAGCAGGGGAGATTACTGCCATAGCTGGTCCTAGTGGGGCTGGCAAAACAACATTGCTAGAGATTCTTGGAGGGAACATACCTTTAAAGAAGATTTCAGGTCAAGTGCTTGTTAATGATCAGCATATGATTGAGAAAACGTTTCCAAGAATCTCGGGATACGTCACACAGGACGATGCGCTATTCCCTTTCCTCACAGTTGAAGAAACACTCATGTATAGTGCTCTGTTGAGGCTTGGTGGTGGGAGAAAAGAGGCTGAATCTAGAGTGAGGAAGCTAATGAAGGACCTTGGATTGGAACACGTAGCAGCGTCGAGAGTTGGAGATGGATCGAACCGAGGCATTTCAGGAGGCGAAATGCGTCGAGTTTCGATTGGAGTTGAATTGGTTCATGACCCAGCTGTGATTTTCATTGATGAACCTACTTCAGGGTTGGATTCTGTCTCGGCAGTTCATGTTATGTCAGTGCTTAGAAGAATGGTCATTAGCCAAGGTAAGACTGTTCTTATAACCATCCATCAACCCGGTTTTCGAATCATGGAACTCTTTGATCGTCTGATTCTTCTGTCGAGTGGAGTTGTGATGCATAATGGACCATTGGGTCATCTTGAGGAGAAGCTTAAGCTTGCTACTCATCAGATCCCTCACCATGTCAATGTTCTTGAATTCGCCATTGACGTGGTGGATAGTTTGGCTATGCATACTTCAGAAACTTTCAACAAACTCCATTACCAACAAAACCGGGTTGAGAATCAGACAATAAGAGCTCTACACATCGACACAAAGGACGAAAAATCCGTTTCGTACCAGAATTCTCGATCCACGGAAGTCATAATACTAGGACAAAGGTTTTTCAGAAACACATTTAGGACCAAACAACTCTTTGCTACAAGAGTCATTCAAGCCTTGGTGGCTGGATTAGTACTTGGGACCATATTCTTCAGGACCGGGAATAACAACGACAAAACTACGTTGCAAACCCGGCTCGGGTTCTTCGCCTTTAGTCTCACGTTCTTGCTGTCTTCAACGACAGAAGGCCTTCCAATCTTCTTGAGGGAGAGAATGATCCTAATGAGAGAGACATCAAGAGGTGCTTACAGAGTATCTTCCTATGTTCTAGCAAACACATTCATATTTCTCCCATTCCTTCTGATGGTCTCTCTACTCTTCGCAGCCAGTGTTTACTGGTTGGTTGGTTTGAAAAACGACGTTTTCGGGTTCTTCTACTTCTCTCTAATCGTTTGGATGGTCGTTCTAATGTCGAATTCTTTCGTAGCATGTTTCAGTGCTCTTGTCCCAAATTTCATTACAGGAAACTCAGTAATAGCAGGGCTAATGGGGTGTTTCTTTCTGTTTTCTGGTTACTTTATATCAAAGAAGAACATCCCCAACTACTGGATTTTCATGCACTATTTGAGTCTTTTCAAGTACCCATTTGAGTGTTTCTTGATAAATGAGTATGGAGGAGATCCAGGGAAGGGAAGATGCATAGAGTCCAAACAAGGAGTATGTACAACATATGGAGAAGTGTTCTTAAGACAACAAGATATAAAAGAGTCACACAAATGGAGCAATTTGGCAGTAATGTTGGGATTCATTGTTGGGTACAGGATCCTGTCTTTTGTGATCTTGTGGTACAGATGTAACAGAACCAGAAGCTAG 1848 42.64 MFFMDLPMKRPISGDRRTQYRIEARNLCYKISESFDGLNWFCGGGSSKRGPKFILKNVNCEARAGEITAIAGPSGAGKTTLLEILGGNIPLKKISGQVLVNDQHMIEKTFPRISGYVTQDDALFPFLTVEETLMYSALLRLGGGRKEAESRVRKLMKDLGLEHVAASRVGDGSNRGISGGEMRRVSIGVELVHDPAVIFIDEPTSGLDSVSAVHVMSVLRRMVISQGKTVLITIHQPGFRIMELFDRLILLSSGVVMHNGPLGHLEEKLKLATHQIPHHVNVLEFAIDVVDSLAMHTSETFNKLHYQQNRVENQTIRALHIDTKDEKSVSYQNSRSTEVIILGQRFFRNTFRTKQLFATRVIQALVAGLVLGTIFFRTGNNNDKTTLQTRLGFFAFSLTFLLSSTTEGLPIFLRERMILMRETSRGAYRVSSYVLANTFIFLPFLLMVSLLFAASVYWLVGLKNDVFGFFYFSLIVWMVVLMSNSFVACFSALVPNFITGNSVIAGLMGCFFLFSGYFISKKNIPNYWIFMHYLSLFKYPFECFLINEYGGDPGKGRCIESKQGVCTTYGEVFLRQQDIKESHKWSNLAVMLGFIVGYRILSFVILWYRCNRTRS 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2216001 2217848 - CmaCh16G004450.1 Cma16g00445 311043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00445 615 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 22 278 IPR003439 GO:0005524
Cma16g00445 615 CDD ABCG_EPDR 34 260 - -
Cma16g00445 615 PANTHER ABC TRANSPORTER G FAMILY MEMBER 10 4 607 - -
Cma16g00445 615 Pfam ABC-2 type transporter 338 549 IPR013525 GO:0016020|GO:0140359
Cma16g00445 615 Pfam ABC transporter 55 205 IPR003439 GO:0005524
Cma16g00445 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 271 IPR027417 -
Cma16g00445 615 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 4 607 - -
Cma16g00445 615 Pfam ABC-2 type transporter 235 300 IPR043926 GO:0140359
Cma16g00445 615 SMART AAA_5 64 255 IPR003593 -
Cma16g00445 615 Gene3D - 15 287 IPR027417 -
Cma16g00445 615 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00445 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213419 1093.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00664 Cma16g00445 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00179 Cma-Chr14:746519 Cma16g00445 Cma-Chr16:2216001 6.27E-126 dispersed
Cma15g00420 Cma-Chr15:1881538 Cma16g00445 Cma-Chr16:2216001 2.73E-127 dispersed
Cma16g00445 Cma-Chr16:2216001 Cma19g01031 Cma-Chr19:8800427 0 dispersed
Cma16g00445 Cma-Chr16:2216001 Cma16g00090 Cma-Chr16:398509 1.13E-156 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003301 1 2 1 0 2 2 1 2 2 1 2 2 2 1 1 1 2 4 2 2 1 2 2 2 1 1 2 2 2 2 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00445 Cma_Chr16 FPKM 1.685885 1.806748 0.591722 0.171266 0.0 0.0 0.0 0.154563 0.0 0.0