Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00446 ATGCCGCAAGATCATCCGAAGAAGGAGGCCAAAGAAATCAAGTTTTTTACTGAATATGGGGATGCTAATAGGTATAAGGTACTTGAAGTTATTGGAAGGGGAAGTTACGGAGTTGTTTGTTCTGCTATTGACATGCATACTAGAGAGAAAGTTGCGATAAAGAGAATTCATGATATTTTTTATCACGCATCGGATGCTATTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTACGGCATCCTGATATCGTCGACATCAAGCATATTATGCTACCACCTTCTAAAAAGGAATTTAAGGACATTTATGTGGTTTGTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAACGACGACTTGACCCGTGAACATCATCAATTCTTTCTCTACCAAATGCTACGTGCTTTGAAATTCATGCATACAGCGAATGTGTATCACAGAGACCTGAAGCCGAAGAATATACTGGCAAATGCCAACTGCAAGCTTAAAATTTGCGATTTCGGGCTTGCAAGAGTTGCTTTCAGTGACACTCCAACCACTGTATTTTGGACAGACTACGTCGCTACTAGATGGTACCGAGCTCCGGAGTTGTGTGGATCATTCTCTTCCAAGTATACTCCTGCGATCGATATTTGGAGTGTCGGCTGCATATTTGCTGAGGTTTTGTTGGGGAAGCCACTGTTTCCGGGTAAAAGCGTTGCCCATCAATTGGACTTGATTACTGATCTTCTCGGGACTCCCTCATCGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCTAGGAGATATCTGTTAGAAATGAGAAGGAAATCTGCAGTGCCATTTTCACAAAGATTTCCGAATTTGGATCCGGCAGCCGTTCGCTTACTGCAAAGGCTATTAGCATTTGATCCGAAGGATCGACCATCAGCCGTGGAGGCTCTTGCTGATCCTTACTTCAAGGGCCTAGCCAAAGTTGAAAGAGAGCCTTCTTGTCAGCCTATCTCGAGATCGGAATTTGAGTTTGAGAGACGAAAATTAACAAAAGATGATGTAAGGGAATTGTTATACCGAGAAATATTAGAATATCATCCTCAAATTCGTGATGATTATTTCAATGGAACCGATACTACAAAGCTCCTCTATCCTAGCTTTACAGGTCATTTTAAAAGCCAATTCACCTACCACAAGGAAAACGACGGTAAAAGCGCACCTGTTTTGCCTCTAGAACGGAAACACTTCTCCCTCCCACGGTCCACCGTTTGCACAAATTTGGTTTCACCCGATCGTGAGCCCGTTCGACGAAATCCTAAAGCCTGTAATAATAGCGTCGGATTACCTGATAGAAGATTTGGGAATCCATCAAAGGCTCATCCTCCACCTAAAGTGCCTGTTGCTGCAAATCTAGGGCGAGTTGTCGGGCCCGTCCTTCCATGTGAGAACAGAAACATAAAAGATGTTTATTCGAAACTAACGTCGCAAATTAGAAGTTTCGATTTGCAAGAGCTTAAGTTGGGAGTGGCAACCATTGCCATTGCTGCTCAGTGGAGTAACAGAGATAGGTATAACCAGCATGTCCATTCAAATGGGTATTGTTTCAAGGGTCTTTTTGTTGTTACTGCATTTGCTGCTTATCACGCCATACCCTTGATTTTGGAAGGCATGTTTTGGATTATGTTGCTTGTGATTGTTCTTCCAATACTCCATTGGATCGATATACGATTAGGAGTCACGTTAAACCGTGTACTAAGAGTAGAAAGAGGCGACACCAAACTCGAACTTTGGTTTGTTCCCGTCGAAACGTTGGCCAGCATTACTGGTGGCCCTCAACCATTCTTAGAACTGAGGAAGGAGTCCAAAAGCCCAATCTCGTCGACAAATTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTTCTGTCTATGGTTGGTAAGGAAAACCCAGCCCTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTAGTATTCCTGGTGTCAAGAGCAACAGCCGGATTAGTTGGGTTAGAGGACCTCACTGTCGAGCATCGGCGTTTGGCAGAGATCATTGAAATGATCCACACTGCAAGCTTGATACATGATGATGTATTAGACGATAGTGATATGAGGAGAGGGAAGGAAACCTTGCATCAATTATACGGTACCAGAGTGGCGGTGCTGGCTGGAGATTTCATGTTTGCACAGTCGTCGTGGTGTCTTGCTAATCTCGAAAACCTCGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCAAGCCTGTTTGATTGTGAAGTTGAACTGGAAGAATATTTGATCAAAAGCTATTATAAAACAGCTTCCTTGATTGCTGCCAGTACCAAAGGTGCTGCAATCTTTAGTGGGGTTGATCGTGATACGACGAAGAAGATGTACGAGTACGGGCGGAATCTCGGTCTCTCATTCCAAATTGTCGATGACATATTGGACTTTACGCAATCAACAAAGCAGCTTGGGAAGCCAGCAGGAAGTGATCTAGCTAAAGGAAATCTTACAGCCCCAGTTATATTTGCTCTTGAAAGAGACCCGAAACTGAAAGACATCATCGGATCAGAGTTCAGCGAGCCAGGGTCTCTCGACGAAGCTATCGGCATAGTCAAGAGCAGTGGTGGCATTGAACGAGCGCAGGAACTAGCTAAACAGAAGGCTGATCTTGCTATCCAAAACCTACAATGCCTTCCACCAAGTGCCTTTCGGTCCGCGCTCGAGGATATGGTGACGTTTAATCTAGAACGGATCGATTAG 2832 43.79 MPQDHPKKEAKEIKFFTEYGDANRYKVLEVIGRGSYGVVCSAIDMHTREKVAIKRIHDIFYHASDAIRILREVKLLRLLRHPDIVDIKHIMLPPSKKEFKDIYVVCELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFSSKYTPAIDIWSVGCIFAEVLLGKPLFPGKSVAHQLDLITDLLGTPSSETIAGVRNEKARRYLLEMRRKSAVPFSQRFPNLDPAAVRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIRDDYFNGTDTTKLLYPSFTGHFKSQFTYHKENDGKSAPVLPLERKHFSLPRSTVCTNLVSPDREPVRRNPKACNNSVGLPDRRFGNPSKAHPPPKVPVAANLGRVVGPVLPCENRNIKDVYSKLTSQIRSFDLQELKLGVATIAIAAQWSNRDRYNQHVHSNGYCFKGLFVVTAFAAYHAIPLILEGMFWIMLLVIVLPILHWIDIRLGVTLNRVLRVERGDTKLELWFVPVETLASITGGPQPFLELRKESKSPISSTNLFEVVADDLQKLNQNLLSMVGKENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEDLTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELEEYLIKSYYKTASLIAASTKGAAIFSGVDRDTTKKMYEYGRNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALERDPKLKDIIGSEFSEPGSLDEAIGIVKSSGGIERAQELAKQKADLAIQNLQCLPPSAFRSALEDMVTFNLERID 943
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2221667 2231639 + CmaCh16G004460.1 Cma16g00446 311044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00446 943 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cma16g00446 943 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma16g00446 943 Pfam Polyprenyl synthetase 650 893 IPR000092 GO:0008299
Cma16g00446 943 CDD Trans_IPPS_HT 646 941 IPR000092 GO:0008299
Cma16g00446 943 ProSitePatterns Polyprenyl synthases signature 2. 827 839 IPR033749 -
Cma16g00446 943 MobiDBLite consensus disorder prediction 425 458 - -
Cma16g00446 943 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00446 943 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Cma16g00446 943 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 438 - -
Cma16g00446 943 ProSitePatterns Polyprenyl synthases signature 1. 705 719 IPR033749 -
Cma16g00446 943 Gene3D Farnesyl Diphosphate Synthase 619 942 IPR008949 -
Cma16g00446 943 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 10 438 - -
Cma16g00446 943 SUPERFAMILY Terpenoid synthases 622 941 IPR008949 -
Cma16g00446 943 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00446 943 SFLD Isoprenoid Synthase Type I 651 939 - -
Cma16g00446 943 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cma16g00446 943 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Cma16g00446 943 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 619 942 - -
Cma16g00446 943 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00446 943 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00654 Cma-Chr11:3178213 Cma16g00446 Cma-Chr16:2221667 1.45E-09 dispersed
Cma16g00446 Cma-Chr16:2221667 Cma20g00258 Cma-Chr20:1252413 0 dispersed
Cma19g01072 Cma-Chr19:8971067 Cma16g00446 Cma-Chr16:2221667 6.66E-61 dispersed
Cma16g00446 Cma-Chr16:2221667 Cma04g00653 Cma-Chr4:3336026 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69191 PF00069 Pkinase 6.50E-64 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00446 - K04371 csv:101213897 905.975