Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00453 ATGAGAAGCTCCACGTCCATGGCGGCTGCTTCTTCTTTCTCTGCAGCATTCTACTCTGGGATTCCATTGATAGACCTCTCTGCACCAGATGCTAAACAACTCATTGTCAAAGCTTGTGAAGAACTCGGATTCTTTAAGGTTGTCAAACATGGTGTCCCCATGGAATTAATCTCCTCTCTTGAATCAGAATCCACCAAATTCTTCTCCCTTCCCCTCTCTGAAAAACAGAGAGCTGGCCCTCCTTCCCCTTTTGGCTATGGAAACAAACAAATTGGCCGCAATGGCGATGTCGGTTGGGTTGAATATCTCCTCTTGAACACTCATCTCGAATCCAACTCCGATGGGTTCCTCTCCATTTTCGGCCAAGACCCACAAAAACTCCGCTCTGCTGTGAACGATTACATCTCGGCTGTGAGGAACATGGCGGGTGAAATCCTCGAGCTAATGGCGGAAGGGTTGAAGATTCAACAACGAAACGTGTTCAGTAAGCTCGTGATGGATGAACAGAGCGACTCTGTTTTCAGAGTGAACCATTATCCGCCATGTCCAGACCTTCAAGCTTTAAAAGGAACAAACATGATTGGATTTGGAGAACACACAGACCCTCAAATCATTTCAGTTTTGAGATCAAACAACACTTCTGGATTTCAAATCTCTCTCGCAGATGGGAATTGGATATCTGTTCCTCCCGATCACAGCTCCTTCTTCATCAATGTTGGTGACTCTTTACAGGTGATGACTAATGGAAGATTCAAAAGTGTGAAGCATAGGGTTTTGACAAACAGCTCGAAGTCAAGGGTTTCAATGATCTACTTCGGTGGGCCACCGTTGAGTGAAAAGATAGCTCCTTTAGCTTCCCTTATGCAAGGAGAAGAAAGAAGTTTGTACAAAGAGTTTACATGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCTGACAACAGGCTTGTGCCCTTTGAAAGAATTGCAGCCTCATAA 984 44.82 MRSSTSMAAASSFSAAFYSGIPLIDLSAPDAKQLIVKACEELGFFKVVKHGVPMELISSLESESTKFFSLPLSEKQRAGPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNDYISAVRNMAGEILELMAEGLKIQQRNVFSKLVMDEQSDSVFRVNHYPPCPDLQALKGTNMIGFGEHTDPQIISVLRSNNTSGFQISLADGNWISVPPDHSSFFINVGDSLQVMTNGRFKSVKHRVLTNSSKSRVSMIYFGGPPLSEKIAPLASLMQGEERSLYKEFTWFEYKRSAYNSRLADNRLVPFERIAAS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2269857 2271606 + CmaCh16G004530.1 Cma16g00453 311051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00453 327 Gene3D - 3 315 IPR027443 -
Cma16g00453 327 PRINTS Isopenicillin N synthase signature 35 52 - -
Cma16g00453 327 PRINTS Isopenicillin N synthase signature 199 220 - -
Cma16g00453 327 PRINTS Isopenicillin N synthase signature 235 261 - -
Cma16g00453 327 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 169 275 IPR005123 -
Cma16g00453 327 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 12 323 - -
Cma16g00453 327 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 112 IPR026992 -
Cma16g00453 327 PANTHER GIBBERELLIN 2-OXIDASE 12 323 - -
Cma16g00453 327 SUPERFAMILY Clavaminate synthase-like 18 315 - -
Cma16g00453 327 Pfam 2OG-Fe(II) oxygenase superfamily 171 273 IPR044861 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00453 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 580.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00105 Cma-Chr7:581638 Cma16g00453 Cma-Chr16:2269857 2.42E-138 dispersed
Cma13g00536 Cma-Chr13:5582531 Cma16g00453 Cma-Chr16:2269857 7.73E-152 dispersed
Cma14g00948 Cma-Chr14:4909702 Cma16g00453 Cma-Chr16:2269857 4.99E-90 dispersed
Cma16g00453 Cma-Chr16:2269857 Cma18g00471 Cma-Chr18:2653034 2.08E-151 dispersed
Cma16g00453 Cma-Chr16:2269857 Cma04g00649 Cma-Chr4:3321297 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g898 . . . . . . . . Cmo16g00489 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00453 . Car16g00411 Cpe14g00383 . . . . . . . . Cla07g00995 Cam07g1070 Cec07g1142 Cco07g1120 Clacu07g1044 Cmu07g1035 Cre07g1411 . . Chy07g01013 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00453 Cma_Chr16 FPKM 18.436834 16.919945 1.270934 1.52433 0.241327 0.225653 0.290086 1.089806 1.47099 1.149045