Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00463 ATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACCGAGTCAGAAGCGCCGGAACGGCCCCCCACTCGGTCTTAAAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGTCTCACTTATACCCCTCCCCTCGCCAATTTCTGCCTCCGGAACCAACACTCCTCTCTCTGTGATTCGGCTTCCTCCGACAACGAGCGAAAGCGCGAATGTCCATTTTGCATTTTGGAGAGGCGGATAGTGAGGTCTTTGAGTTTGGATCTCACCTTAGATTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGACGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGAAATGGCAACTACAACGGTGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGATTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAATAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCAATACTCCAACCACCTAATATTCTTGTCATCCAATTGAAGAGATTTGATGGCATATTTGGGGGTAAGATTGACAAGGCTATTGCGTGTGACGAAAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCCGCAGAATCTGGACATTATTATGCATACATCAAGGATGCATCAGGTAGATGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATTCTCTTTTTCTCTCGTACGAATCAAAGGCCAGTAACTACTAGCACAGATCTTGCTTCCAATGGTGTAAAATCTCATCAATGTCATGGCAGTGATGGATTCAAAATGTCGAAACCTTCTGTTGTAACTAAAATGGCACTGACAAGATCCCATGTTGAGCAATCTTCTTGGAAGGAACTTTCAAGTTCATTTAAGGTAGATAAACCAACTTCCAGTCCGCAAGGAAAGTCGTATATGAATGGACATTCTAATTCCATGCAAGCTCCTTCCACCATTAATGGAAAGATTGTTCTTGAGAAGGATGAATCCATCAAGGAGAATGAGAAAGAGAATATAAACTCGTTGCCTCTGGAAAATGGTGCTAGACATATATCTTTGCTAGGGAATGGAAATATCAGGGAAAATCATGAAGTTCATTGTGATGTCCCTGAGAAGGAACATAAATCTGTGTTAATGAATGGTAATGTAAATGGTGAGAGTATGGGAATGAAATCAGATAAACATGACCAGTATTATGGTAAATCTATGAATATCAAGATCACTGCAGGAAGAGGGTCTGATCATGATGAAATTGATAATACAGTCAACTGCCCCTCTGAAATCAAAAGGGCCAAAAGAAGATCAGACTTATGTATCTTGTCTCAACAGGATTCTCAATCTCGGGGAAGAGTTGAAGAACTTAAACAAAATCTCAAGAATGAAACTTCCTCAGTTTTAAGATCATGCGGTTGGTCAGAGGAGGTCTTCAGTTGCATGCGAACAAGGAAGAGATTATGTTTACGAGAAACTGGCAGGACACCAAGTAGGAATGACTTAAAGATATTGCTGATTGCGGATGCCAGAAAGAAGTTTATTTCACGGATACCAGAACCTCTAAAAGAGGACCTTATCAAAAAACTTAAACTGTTTAGCCATGAAAAGTAA 1929 42.61 MALQLQMSWQPSLPSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDNERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGNGNYNGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKIDEIMDISLDVLHSSSLKEALQKFFQLEVLDGNNKYKCDNCKKLVVARKQMSILQPPNILVIQLKRFDGIFGGKIDKAIACDESLQLSNFMCKGSQDPRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTTSTDLASNGVKSHQCHGSDGFKMSKPSVVTKMALTRSHVEQSSWKELSSSFKVDKPTSSPQGKSYMNGHSNSMQAPSTINGKIVLEKDESIKENEKENINSLPLENGARHISLLGNGNIRENHEVHCDVPEKEHKSVLMNGNVNGESMGMKSDKHDQYYGKSMNIKITAGRGSDHDEIDNTVNCPSEIKRAKRRSDLCILSQQDSQSRGRVEELKQNLKNETSSVLRSCGWSEEVFSCMRTRKRLCLRETGRTPSRNDLKILLIADARKKFISRIPEPLKEDLIKKLKLFSHEK 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2316505 2324719 + CmaCh16G004630.1 Cma16g00463 311061

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00463 642 MobiDBLite consensus disorder prediction 398 424 - -
Cma16g00463 642 Pfam Ubiquitin carboxyl-terminal hydrolase 25 339 IPR001394 GO:0004843|GO:0016579
Cma16g00463 642 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 284 302 IPR018200 GO:0004843|GO:0006511
Cma16g00463 642 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 384 - -
Cma16g00463 642 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 20 384 - -
Cma16g00463 642 SUPERFAMILY Cysteine proteinases 17 341 IPR038765 -
Cma16g00463 642 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Cma16g00463 642 Gene3D Cysteine proteinases 18 344 - -
Cma16g00463 642 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 342 IPR028889 -
Cma16g00463 642 CDD Peptidase_C19E 23 340 - -
Cma16g00463 642 MobiDBLite consensus disorder prediction 1 21 - -
Cma16g00463 642 MobiDBLite consensus disorder prediction 1 17 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00463 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101218797 1041.57
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma09g00749 Cma16g00463 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00398 Cma-Chr13:4526042 Cma16g00463 Cma-Chr16:2316505 1.20E-12 dispersed
Cma16g00463 Cma-Chr16:2316505 Cma16g01159 Cma-Chr16:8895495 2.17E-46 dispersed
Cma16g00463 Cma-Chr16:2316505 Cma04g00641 Cma-Chr4:3273122 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00463 Cma_Chr16 FPKM 7.196363 8.898183 7.886463 7.879095 8.307129 7.299614 8.689177 24.682892 23.259182 26.117556