Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00464 ATGGCGGACGAAGTGAAACTGCTGGATTTCTGGCCGAGTATGTTCGGGATACGAGTTAGAATAGCCCTGGCCGAGAAGGGCGTAGCGTATGAATACATGGAACAAGATCTGAGGAACAAGAGCCCTTTGCTGTTGCAGATGAACCCAGTTCACAAGAAGATCCCTGTTCTTGTCCATAATGGAAGACCCATTTGTGAATCTTCCATTATCGTTCAGTACATCGATGAAGTTTGGAAGGACAAAGCTCCTCTCCTGCCGTCTGATCCTTATCAGAGGGCTCAGGCCCGATTCTGGGTGGATTTCATCGACAAGAAGGCAGGGATGAAGGAGCTGATTGGAGTTTTGAAGCAGCTGGAAGAGGTTCTTGGGGAGAAGAGTTTCTTCGGAGGGGAGCGTTTGGGGTTTGTAGACATTGCTTTGATTGGATTCCACAGTTGGTTTTATAGCTATGAGGCGTTTGGTAAGTTGAGCATCGAGGCTGAGTGTCCCAAGATAATGGGTTGGGCGAAGAGATGCTTGGAGAAGGAGAGTGTTTCCAAGTCCTTGCCTGACTCCAAGAAGGTCTATGACTTTGTGGTTCAAATGAAGAAAGCACTTGGCCTTGAATGA 609 47.78 MADEVKLLDFWPSMFGIRVRIALAEKGVAYEYMEQDLRNKSPLLLQMNPVHKKIPVLVHNGRPICESSIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKAGMKELIGVLKQLEEVLGEKSFFGGERLGFVDIALIGFHSWFYSYEAFGKLSIEAECPKIMGWAKRCLEKESVSKSLPDSKKVYDFVVQMKKALGLE 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2326120 2328293 + CmaCh16G004640.1 Cma16g00464 311062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00464 202 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 197 IPR045073 -
Cma16g00464 202 Gene3D Glutaredoxin 1 87 - -
Cma16g00464 202 Pfam Glutathione S-transferase, C-terminal domain 104 175 IPR004046 -
Cma16g00464 202 CDD GST_N_Tau 5 78 - -
Cma16g00464 202 Gene3D - 88 202 - -
Cma16g00464 202 SUPERFAMILY GST C-terminal domain-like 76 197 IPR036282 -
Cma16g00464 202 SFLD Main.3: Omega- and Tau-like 2 199 IPR045073 -
Cma16g00464 202 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cma16g00464 202 SUPERFAMILY Thioredoxin-like 5 105 IPR036249 -
Cma16g00464 202 SFLD Main (cytGST) 2 199 - -
Cma16g00464 202 PANTHER S-TRANSFERASE TAU 22, PUTATIVE-RELATED 4 197 - -
Cma16g00464 202 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 63 199 IPR010987 -
Cma16g00464 202 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cma16g00464 202 CDD GST_C_Tau 89 195 IPR045074 GO:0004364|GO:0006749
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00640 Cma-Chr4:3271577 Cma16g00464 Cma-Chr16:2326120 7.03E-116 dispersed
Cma16g00464 Cma-Chr16:2326120 Cma06g01277 Cma-Chr6:8499592 2.67E-50 dispersed
Cma16g00464 Cma-Chr16:2326120 Cma16g00465 Cma-Chr16:2333498 1.25E-135 tandem
Cma04g02270 Cma-Chr4:15857294 Cma16g00464 Cma-Chr16:2326120 1.68E-76 transposed
Cma16g00464 Cma-Chr16:2326120 Cma04g00638 Cma-Chr4:3268691 6.49E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00464 K00799 - csv:101218562 339.732