Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00465 ATGGCGGAGGAAGTGAAACTGCTGGATTTCTGGCCGAGCATGTTCGGGATACGAGTTAGAATAGCCCTGGCCGAGAAGGGCGTAGCGTATGAATACATGGAACAAGATCTGAGGAACAAGAGCCCTTTGCTGTTGCAGATGAACCCAGTTCACAAGAAGATCCCTGTTCTTGTCCATAATGGAACACCCATTTGTGAATCCTCCATTATCCTTCAGTACATCGATGAAGTTTGGAATGACAAAGCCCCTCTCCTCCCCTCTGATCCTTATCACAGGGCTCAGGCCAGATTCTGGGTGGATTTCATCGACAAGAAGCTTTGTGATGCGGGGAGGAAGGTATGGGGCGGGAGGGGAGAAGAGGCGGAGGCAGGGATGAAGGAGCTGATTGGAGTTCTGAAGCAGCTGGAAGAGGTTCTTGGGGAGAAGGGTTTCTTCGGAGGGGAGCGTTTGGGGTTTGTAGACATTGCTTTGATTGGATTCTACAGTTGGTTTTATAGCTATGAGGCGTTTGGTAAGTTGAGCATCGAGGCTGAGTGTCCCAAGATAATGGGTTGGGTGAAGAGATGCTTGGAGAAGGAGAGTGTTTCCAAGTCCTTGCCTGACTCCAAGAAGGTCTATGACTGCGCGGTTCAAATGAAGAAAGCACATGGCCTTGAATGA 660 49.7 MAEEVKLLDFWPSMFGIRVRIALAEKGVAYEYMEQDLRNKSPLLLQMNPVHKKIPVLVHNGTPICESSIILQYIDEVWNDKAPLLPSDPYHRAQARFWVDFIDKKLCDAGRKVWGGRGEEAEAGMKELIGVLKQLEEVLGEKGFFGGERLGFVDIALIGFYSWFYSYEAFGKLSIEAECPKIMGWVKRCLEKESVSKSLPDSKKVYDCAVQMKKAHGLE 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2333498 2334374 + CmaCh16G004650.1 Cma16g00465 311063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00465 219 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Cma16g00465 219 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cma16g00465 219 CDD GST_N_Tau 5 78 - -
Cma16g00465 219 SUPERFAMILY GST C-terminal domain-like 76 213 IPR036282 -
Cma16g00465 219 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 213 IPR045073 -
Cma16g00465 219 SFLD Glutathione Transferase (cytosolic) 2 216 IPR040079 -
Cma16g00465 219 Gene3D - 88 219 - -
Cma16g00465 219 PANTHER S-TRANSFERASE TAU 22, PUTATIVE-RELATED 4 213 - -
Cma16g00465 219 Pfam Glutathione S-transferase, C-terminal domain 118 192 IPR004046 -
Cma16g00465 219 SFLD Main.3: Omega- and Tau-like 2 216 IPR045073 -
Cma16g00465 219 Gene3D Glutaredoxin 1 87 - -
Cma16g00465 219 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cma16g00465 219 CDD GST_C_Tau 89 207 IPR045074 GO:0004364|GO:0006749
Cma16g00465 219 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00321 Cma-Chr4:1587829 Cma16g00465 Cma-Chr16:2333498 1.43E-57 dispersed
Cma04g00638 Cma-Chr4:3268691 Cma16g00465 Cma-Chr16:2333498 5.99E-84 dispersed
Cma04g00639 Cma-Chr4:3269916 Cma16g00465 Cma-Chr16:2333498 3.60E-123 dispersed
Cma04g00641 Cma-Chr4:3273122 Cma16g00465 Cma-Chr16:2333498 2.29E-89 dispersed
Cma04g02270 Cma-Chr4:15857294 Cma16g00465 Cma-Chr16:2333498 1.23E-80 dispersed
Cma16g00465 Cma-Chr16:2333498 Cma03g00383 Cma-Chr3:4364137 7.66E-53 dispersed
Cma16g00464 Cma-Chr16:2326120 Cma16g00465 Cma-Chr16:2333498 1.25E-135 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00465 K00799 - csv:101218562 358.221