Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00466 ATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAGGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCATTGAGATATTCGATCAACAAGTTTAGGTTGCATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAAGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCATTGAGATATTCGATCAACAAGTTTAGGTTACATGTAGAATCATTCAAGCTCGACATGATCAATCTTGCTTGTGGAGTGATTCGAATCTCATGGAGGTGTTCTTGCCTTGAGATATTTGATCAACAAGAATCATTCAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAAACAATGTTCTTGCATTGAGATATTCGATCAACAAGAATCATCATCGCTCTCTGTTTCTCTGCAACTTCTTTTTTGTTCTCTTTACAGACAAACTCTCATTATTTACTTCTTCTGATCCATTAATTACATTGCCATTTCTGGTTATCGATTCCTTGTTACCCTGTTCTTGCCTCCTGAACAGTTCGGCTTCGATGCAAGATCAAGATTGCTGTTCTAGCCCCGGTGAAGCGCAATCCATTCCGGAATTTACCTTCATTTCTCCTGATATTGCAATGGATAACTACTGTGATTCACCAGAACTCTTCGATATCAAGTGTTCTAAGTCTATGGAGCTTTCCTTCGAAAGTAGCTTTTCTGGAATTGAGGTTAATTACAAACAGAGAACTCCATCTGTTAGATTTTCCCAGTTGTGTGAAACCTATGATCCAGAACTTTCTCCAGAATCTTCCTTTGAGTTGGCAACTCCTCCAGCTACCAGTTCTACACAATCTGAAGAACTCCTTCAAGCTGTAAGTGTCAATGCAGGTTCCTCAAATGATGCTGTGAGTTTGGATGGGATAAACTATGTGGAAGACAATTGGTTCAAGGGTGGTGATACCATTAGATCTGATGAAATTGAACATCCTTTATATCAAACAGCTCGTTTTGGGAACTTTTTTTACAGCTTCTCGTTATTGGAACCTGGGGATTATGTTGTTGATCTTCATTTTGCTGAAGTTGTGTTTACCAATGGCCCTCCTGGTATGAGGATGTTTGATGTTTATTTGCAGGATCAGAAGGTCGTTTCTGGCTTGGACATATACGCTCGTGTTGGTGGGAATAAGCCTCTCATTATATCTGACCTCAAAACTTCTGTAGAAGTAAAAGATTTAACCATTAGATTTGAAGGACTGATGGGCAGGCCAATTGTCTGTGGTATTTCTGTGAGGAAAGATCTTCCTTCCATTGTTAAAGAAGTTGAGCTGCTCGAAGATGTGGGATCCTCTCGACTAGAACACTCAGAGATTTCCAAAGATAGTAGTGAGTTGATAGTAAAAGAGAATGAGCTGATGAAGAATGAGATAGCAGCAGCAAGGAAACAAATGGAGGAGCTTAGAAAGGAAAACAATCAGAAGAGTAAGGAATGCCAAGAAGCTTGGAAGTCTCTAAATGAGCTACAAAATGAGCTCATGCGCAAGTCAATGCATGTTGGATCTCTTGCCTTTGCCGTTGAGGGACAGGTGAAAGAAAAGAGCAAATGGTTTTCCTCATTAAGGGATCTTACCAGAAAAGTAAAGATTATGAAAATGGAAAACATCAAATTGTCGGAGGAGGCACTTGCATTCAAGAGCTGCTTTGTGGATATGAACGAAATGATGACATCCCAAATTCAGACAGCATTTAAGCAGCAATTAGATTTTCAAGAAAATCTGAAGACCAAATTTGTTGAAGGAGCTAAGGAACGTAAAGAACTCTACAATAAGATGTTGGAGTTGAAAGGAAACATTAGGGTCTTTTGTCGGTGTAGGCCCTTAAATACAGAAGAGATTGCCTCTGGAGCTCCTATGGTTGTTGATTTTGAGTCAGCTAAAGATGGTCAGCTGATTGTTAAGTCAAATGGAGGTCCCAAAAGGGTCTTCAAATTTGATGCTGTATTTGGTCCTCAAGCAAATCAAGGAGATGTCTTTGAAGACACTGCTCCATTTGCTGCTTCAGTTCTAGATGGCTACAACGTTTGCATATTTGCATATGGCCAAACGGGGACTGGAAAAACCTTTACAATGGAGGGTACTGAAGGAGCTCGTGGAGTCAATTATAGGATTCTTGAGGAGTTGTTTCGCTTAACGAAGGAGCGGCAGAAGCTCAATCGATATAAAGTATCTGTTAGTGTCTTGGAAGTGTATAATGAGCAAATAAGGGACTTGTTAGTGTCAGGATCTCAGTCAGGGAACGGTATAAAACGGCTTGAAGTAAGGCAAATCAGTGAAGGAATACATCATGTTCCTGGCATGGTGGAGGCTCCTGTTCACAACATGAGTGAAGTTTGGGAAGTTCTACAAACTGGCAGTAATGCAAGAGCTGTTGGTTCAACCAATTGTAACGAGCACAGCAGCCGATCTCACTGCATACATTGTGTAATGGTGAAAGGGGAGAATTTGCTGAGTGGGGAGTGCACCAGCAGCAAACTCTGGCTGGTGGACTTGGCAGGGAGCGAGCGGATAGCTAAAGTAGAAGTACAGGGTGAACGTCTCAAGGAAACACAAAACATTAACAGATCACTTTCTGCACTTGGGGATGTCATAGCTGCTCTTGGGACAAAAAGTCCACACGTTCCTTTTAGGAACTCTAAGCTCACTCACTTGCTTCAAGATTCACTAGGGGGAGATTCAAAGACACTAATGTTCGTACAGATCAGTCCAAACGAAAATGACTTGAATGAAACTCTTTGTTCATTGAACTTCGCAAGCAGAGTTAAGGGAATTGAGCTGGGTCCTGCAAAAAGACAGCTTGATATGTCTGAATTCCTTAAATGCAAGCAAATGGCACAAGCTTCAAAGCAGGATATGAAGGGTAAAGAACTACAAATGAGGAAAATGGAAGAAACAATACATGGGTTTGAGTTGAAAATGAAGGAAAAAGAGCTGAAAAACAAGAATCTACAAGACAAGGTGAAAGAACTTGAAGCGCAGCTTCTTGTTGAAAGGAAGCAGCAGCAGCAGCAAATAAAGGTTAATACTCGCCCACTAACTGAGAACAACGGCTTCAAACCATCATTCTACCCTTTTCCTGGTGGCATCAGTGATGGAACAGAGAAGGAGAACAATCCAGGGATGGCTGAGCTATCTTTTGTGCCAATGAAGAGGACAGGAAGAGCGTCGATTTGCACAATGGGCCGACGTGTACCGACGGCGCTCGAACCGAGGAGAAATTCCCTAATGCCTCTACCAAGCATGCCAAGCTCAGCTCATCTGCCATCAGCAAAGTTGATAGAGGAAGATGAGAGCAACTGCGAGAGTCCTAATGAGATAAAGTGTGTGAGAGGAGGAAGCGTTCAGAAGAAGAAGATGCAAATGAAACGAGGGGGAATCAATGTGGGGATGGAGAAGGTCAGGGTGTCCATTGGAAGCCGAGGAAGGATGGCGGCAGCACACGCACACAGGGTGCTGCTAGGCAATGGTAGGAGAGCAGCTAATGACACTCAAAGTAAGAGGGAAAAGGAGAGGGGTTGGAACATGGGAACAATAGTAGGGAGAAACTCAAAGTAA 3762 42.0 MINLACGVIRISWRCSCLEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKFRLHVESFKLDMINLACGVIRISWKCSCLEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKFRLHVESFKLDMINLACGVIRISWRCSCLEIFDQQESFKLDMIDLACGVIRISNNVLALRYSINKNHHRSLFLCNFFFVLFTDKLSLFTSSDPLITLPFLVIDSLLPCSCLLNSSASMQDQDCCSSPGEAQSIPEFTFISPDIAMDNYCDSPELFDIKCSKSMELSFESSFSGIEVNYKQRTPSVRFSQLCETYDPELSPESSFELATPPATSSTQSEELLQAVSVNAGSSNDAVSLDGINYVEDNWFKGGDTIRSDEIEHPLYQTARFGNFFYSFSLLEPGDYVVDLHFAEVVFTNGPPGMRMFDVYLQDQKVVSGLDIYARVGGNKPLIISDLKTSVEVKDLTIRFEGLMGRPIVCGISVRKDLPSIVKEVELLEDVGSSRLEHSEISKDSSELIVKENELMKNEIAAARKQMEELRKENNQKSKECQEAWKSLNELQNELMRKSMHVGSLAFAVEGQVKEKSKWFSSLRDLTRKVKIMKMENIKLSEEALAFKSCFVDMNEMMTSQIQTAFKQQLDFQENLKTKFVEGAKERKELYNKMLELKGNIRVFCRCRPLNTEEIASGAPMVVDFESAKDGQLIVKSNGGPKRVFKFDAVFGPQANQGDVFEDTAPFAASVLDGYNVCIFAYGQTGTGKTFTMEGTEGARGVNYRILEELFRLTKERQKLNRYKVSVSVLEVYNEQIRDLLVSGSQSGNGIKRLEVRQISEGIHHVPGMVEAPVHNMSEVWEVLQTGSNARAVGSTNCNEHSSRSHCIHCVMVKGENLLSGECTSSKLWLVDLAGSERIAKVEVQGERLKETQNINRSLSALGDVIAALGTKSPHVPFRNSKLTHLLQDSLGGDSKTLMFVQISPNENDLNETLCSLNFASRVKGIELGPAKRQLDMSEFLKCKQMAQASKQDMKGKELQMRKMEETIHGFELKMKEKELKNKNLQDKVKELEAQLLVERKQQQQQIKVNTRPLTENNGFKPSFYPFPGGISDGTEKENNPGMAELSFVPMKRTGRASICTMGRRVPTALEPRRNSLMPLPSMPSSAHLPSAKLIEEDESNCESPNEIKCVRGGSVQKKKMQMKRGGINVGMEKVRVSIGSRGRMAAAHAHRVLLGNGRRAANDTQSKREKERGWNMGTIVGRNSK 1253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2343498 2354389 - CmaCh16G004660.1 Cma16g00466 311064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00466 1253 Gene3D - 341 485 - -
Cma16g00466 1253 ProSitePatterns Kinesin motor domain signature. 893 904 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cma16g00466 1253 Pfam Malectin domain 343 479 IPR021720 -
Cma16g00466 1253 ProSiteProfiles Kinesin motor domain profile. 667 993 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma16g00466 1253 Gene3D Kinesin motor domain 609 995 IPR036961 -
Cma16g00466 1253 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 250 1076 - -
Cma16g00466 1253 PANTHER KINESIN-LIKE PROTEIN KIN-14Q 1092 1234 - -
Cma16g00466 1253 MobiDBLite consensus disorder prediction 1223 1253 - -
Cma16g00466 1253 PANTHER KINESIN-LIKE PROTEIN KLP-3 250 1076 - -
Cma16g00466 1253 PANTHER KINESIN-LIKE PROTEIN KLP-3 1092 1234 - -
Cma16g00466 1253 Coils Coil 590 610 - -
Cma16g00466 1253 SMART kinesin_4 665 1001 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma16g00466 1253 Coils Coil 520 551 - -
Cma16g00466 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 667 1000 IPR027417 -
Cma16g00466 1253 Coils Coil 1014 1069 - -
Cma16g00466 1253 CDD KISc_C_terminal 665 995 - -
Cma16g00466 1253 Pfam Kinesin motor domain 673 993 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma16g00466 1253 PRINTS Kinesin heavy chain signature 741 762 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma16g00466 1253 PRINTS Kinesin heavy chain signature 943 964 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma16g00466 1253 PRINTS Kinesin heavy chain signature 894 912 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cma16g00466 1253 PRINTS Kinesin heavy chain signature 863 880 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00466 K10406 KIFC2_3; kinesin family member C2/C3 - csv:101222343 1594.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00636 Cma16g00466 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01136 Cma-Chr5:8883021 Cma16g00466 Cma-Chr16:2343498 1.19E-168 dispersed
Cma06g01076 Cma-Chr6:7251249 Cma16g00466 Cma-Chr16:2343498 1.01E-25 dispersed
Cma07g00568 Cma-Chr7:2450680 Cma16g00466 Cma-Chr16:2343498 3.25E-69 dispersed
Cma09g00922 Cma-Chr9:4600528 Cma16g00466 Cma-Chr16:2343498 1.84E-93 dispersed
Cma12g01072 Cma-Chr12:8475904 Cma16g00466 Cma-Chr16:2343498 8.81E-163 dispersed
Cma13g00704 Cma-Chr13:6379957 Cma16g00466 Cma-Chr16:2343498 1.39E-98 dispersed
Cma16g00466 Cma-Chr16:2343498 Cma01g00299 Cma-Chr1:1441321 4.08E-102 dispersed
Cma16g00466 Cma-Chr16:2343498 Cma04g00636 Cma-Chr4:3259184 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g956 . . . . Bpe09g00290 . . Bma13g00898 Cmo16g00505 . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0984 . . . . . Blo10g00686 . . . . . . . . . Cma04g00636 Cma16g00466 Car04g00595 Car16g00421 . Cpe01g00574 . . . . . . . Cla07g01010 Cam07g1087 Cec07g1159 Cco07g1137 Clacu07g1061 Cmu07g1052 Cre07g1428 . . Chy07g01045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003005 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00466 Cma_Chr16 FPKM 1.732066 1.63753 0.175009 0.330426 8.227964 9.16432 9.339571 0.033045 0.0 0.0
Cma16g00466 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Cma16g00466 Cma_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0