Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00467 ATGACTTGCTTCCCTTTTTTGTTCAGTAAGAGGGTAAATCCCCCAACAAAAAGTTTTGTTGATGAAGAAGAAGAACTGTGGGGCATCCAAAATGTTAGATTTTACGCTTACAAAGAGCTGAAAGTTGCGACCGAAGATTTCAGCTTGGCGAATAAAATAGGAGAGGGTGGTTTTGGCTCTGGAAAGCTAAAAGATGGAAAGATTGCTGCCATAAAAGTTCTTTCAGCTGAGTCAAGACAAGGATTGAAGGAGTTCTTGACAGAAATCAACGTCATCTCTGTGATAGAACATGAAAATCTGGTTCAGCTTTATGGCTGCTGTGTGGATGATAATCATAGAATCCTTGTCTACAACTACCTCGAGAATAATAGCCTTGCACAAACTCTTCTCGGGCGAGGTCACAGTAGCATCCAGTTTAATTGGCGAACAAGGTCCAAGATCTGCATTGGAATTGCACGTGGGCTCGCGTTCCTTCACGAGGACGTACAGCCACATATCATTCATAGAGATATCAAAGCCAGCAACATTCTTCTCGACCGCGACCTCACTCCTAAAATTTCAGATTTCGGCCTCGCAAAGCTTATTCCAGCCAGCATGACTCATGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTAGCTCCAGAATATGCAATCAGAGGGCAGGTGACAAGAAAATCGGATCTTTACAGTTTCGGCGTCCTCCTCGTGGAAATAGTCAGCGGGAGATGCAACACGAATACACAACTACCAATGGGAGAACAATATCTTCTTGAAAGGACATGGAATGATTACGAGCGAGGAGAGCTCGTTCTACTTGTAGATGCGTCCTTAAATGGCGACTTCGATGCCGAGGAGGCTTGTAGATATCTAAAGATTGGTCTACTGTGCACTCAAGACAGTCCGAAGCTCCGTCCATCGATGTCGACTGTGGTAAAGATGCTAACGGGCGAGATGAGTATCGAAGATAGAAAGATAACGAAACCGGGGCTGATTTTGGACTTCATGGATCTAAAAGAACACCTTCTCATCTGTGCTGTGAAAGTGGCTAAGATAATTTCATTCATTCTCTTCTGCAATAGAGTTTTGGGGAAAAACTTTGATTCATGTCGGTGCTCCATTCACTCTGTTCTTGTGTTGGGTTCTTCCATTTCTCATGATTCCCAATGCGTTGTTATTGTCGCTGATGGTAGGATATGGGATCTTTTGATTGTCCTCTTTTTCTCAGAAAAGTGTTTCTGTTGGTTGCTCTTTTTTGTGTCTTCTTTTCTTTGTGGAAACTTACATGTGAAGCAATTTGCGTTGAATGAACTGACTGCCATGGAGGATATAGGCCTTTTCAAGCAAGGATGGAAATGGTTTCAGTCGCAGAAGCACACTTACTTGCGTGCTCAAACTGTGTTTTTTAGATTCAGAGACAAAGTTGGGATGTTCATTGAGAGACATTGGCCAATGGTGTGCCGTGGCTGTGCCTGGATTGGGAGTTTACTGTGGCTAGCTGTGCTTCAATGGTGGGATTGCATTATAAAAGGCTTTCGGTCGCTTGTCGGATTAGGCTCTGCTGCATTGCTCCTTATAATGTGGAGTTGCTTTCTTAGTTTAACATCCATGTCCTGCCTGGCTTATGTTCTTCTCAGTATGCTTAGTCCACTGTTTCAGGGAGCTGCAGGAGTTGCTGTTCAATACCTGGGTTACACTCCTGGAATATTTATCGTGGGGCTCTTCGCTATTCTGGTTTTGTGGATGTACGCTAACTTTTGGATTACAGGGGCGTTGTTTATAGTTGGAGGTTATTTGTTCTCTCTTAATCATGCACGGTTGGTGGTGTTAATTGCAACTGTATATGCTATATATTGTGTTAAAGTTCGTGTTGGATGGCCGGGTGTCTTTCTCTCGATAAATCTTGCATTTCTGTCAAACGATGCATTAAATTATATGCTCCAATGGTGTGATAAGGCGAGTGAGAGTTCACATTTGGAGGAGCCGAAACAATCTGAAACAGTATCGGAAGACGAATTCTCAGGAGAGTGTGAATACTCTGTTCCTACCGGTGAGTCCGAGAAGGTGCATGCGTGTAAATCATCGACCCCAACTGTTGTGACATCTGTTGTTGATAACCAGAAAGAGGCTTCTTGTAGCAAGGTGACCAAAGAGCAGACCGATTCAGTCGACGAGATGAAAAGAATACTAAATAGTGTGGACCATTACGAAGCACTAGGGTTTCCGCGTCACAAGAAGATCGATGTAATAGTTTTGAAGAAGGAATACCGAAAAAAGGCTGTGCTTGTGCATCCTGATAAGAATATGGGAAGCCCGTTGGCTAGCGACGCATTTAAAAAGCTTCAATGTGCATATGAGGTTCTTTCCGACTCCGTGAAGAAAAGAGACTATGATGAGCAATTGAGAAAGGAGGAATTGAAGACCAAAAGTGTCTGCCAAAGGTCCCAGTCCTATGGGACTTCACAACAGATGAATTCTGATTATTGCTCCGAGGAGTCGAGACGTATACAGTGCAGTAAATGCGGGCATTCGCATGTATGGGTCTGCACAAATAGGAACAAGACAAAGGCGAGATGGTGCCAGGATTGTTGTCAATATCATCAAGCCAAGGATGGAGACGGATGGGTCGAATATAAAGGGTCTCTAATCTTCGATAAACCTCAGAAAATGGATATACCACGAGCTTTCGTTTGTGCGGAGAGCAAAATCTTCGATGTGTCCGAATGGGCGATTTGTCAAGGAATGGCTTGCAGACCGAACACTCATCGCCCAAGCTTTCACGTAAACATGGTCGGTTTAGGAAAAACCACACAACGATCGAAGTCGAGTAGATTTCCTTGGGAATTGGATGCTGAAATGATGGACGAAGACGAGGAAGAATTCGAGCTTTGGCTTCAGGAGGCTTTAGCCTCCGGTCTCTTCTGCGAAACCTCGAAACGGAGGAAGAGCTGGAGCCCGTTCAAATTGGGGCAGAAGAAAGGGAGCAGCAAACAATGGCGAAGAACATCATGCTAG 3015 44.25 MTCFPFLFSKRVNPPTKSFVDEEEELWGIQNVRFYAYKELKVATEDFSLANKIGEGGFGSGKLKDGKIAAIKVLSAESRQGLKEFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLAQTLLGRGHSSIQFNWRTRSKICIGIARGLAFLHEDVQPHIIHRDIKASNILLDRDLTPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDLYSFGVLLVEIVSGRCNTNTQLPMGEQYLLERTWNDYERGELVLLVDASLNGDFDAEEACRYLKIGLLCTQDSPKLRPSMSTVVKMLTGEMSIEDRKITKPGLILDFMDLKEHLLICAVKVAKIISFILFCNRVLGKNFDSCRCSIHSVLVLGSSISHDSQCVVIVADGRIWDLLIVLFFSEKCFCWLLFFVSSFLCGNLHVKQFALNELTAMEDIGLFKQGWKWFQSQKHTYLRAQTVFFRFRDKVGMFIERHWPMVCRGCAWIGSLLWLAVLQWWDCIIKGFRSLVGLGSAALLLIMWSCFLSLTSMSCLAYVLLSMLSPLFQGAAGVAVQYLGYTPGIFIVGLFAILVLWMYANFWITGALFIVGGYLFSLNHARLVVLIATVYAIYCVKVRVGWPGVFLSINLAFLSNDALNYMLQWCDKASESSHLEEPKQSETVSEDEFSGECEYSVPTGESEKVHACKSSTPTVVTSVVDNQKEASCSKVTKEQTDSVDEMKRILNSVDHYEALGFPRHKKIDVIVLKKEYRKKAVLVHPDKNMGSPLASDAFKKLQCAYEVLSDSVKKRDYDEQLRKEELKTKSVCQRSQSYGTSQQMNSDYCSEESRRIQCSKCGHSHVWVCTNRNKTKARWCQDCCQYHQAKDGDGWVEYKGSLIFDKPQKMDIPRAFVCAESKIFDVSEWAICQGMACRPNTHRPSFHVNMVGLGKTTQRSKSSRFPWELDAEMMDEDEEEFELWLQEALASGLFCETSKRRKSWSPFKLGQKKGSSKQWRRTSC 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2360646 2372210 - CmaCh16G004670.1 Cma16g00467 311065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00467 1004 ProSiteProfiles dnaJ domain profile. 734 801 IPR001623 -
Cma16g00467 1004 Pfam Protein kinase domain 49 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00467 1004 PRINTS DnaJ domain signature 756 771 IPR001623 -
Cma16g00467 1004 PRINTS DnaJ domain signature 773 793 IPR001623 -
Cma16g00467 1004 Gene3D DnaJ domain 719 823 IPR036869 -
Cma16g00467 1004 SUPERFAMILY Chaperone J-domain 729 802 IPR036869 -
Cma16g00467 1004 Gene3D Transferase(Phosphotransferase) domain 1 120 329 - -
Cma16g00467 1004 Pfam Cleavage inducing molecular chaperone 832 929 IPR032843 -
Cma16g00467 1004 SMART serkin_6 47 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00467 1004 PANTHER OS03G0832900 PROTEIN 441 1003 - -
Cma16g00467 1004 SMART dnaj_3 733 793 IPR001623 -
Cma16g00467 1004 ProSiteProfiles Protein kinase domain profile. 47 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma16g00467 1004 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 441 1003 - -
Cma16g00467 1004 SUPERFAMILY Protein kinase-like (PK-like) 24 315 IPR011009 -
Cma16g00467 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Cma16g00467 1004 Pfam DnaJ domain 734 798 IPR001623 -
Cma16g00467 1004 Gene3D Phosphorylase Kinase; domain 1 18 119 - -
Cma16g00467 1004 CDD DnaJ 734 790 IPR001623 -
Cma16g00467 1004 CDD STKc_IRAK 53 317 - -
Cma16g00467 1004 ProSitePatterns Nt-dnaJ domain signature. 778 797 IPR018253 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00571 Cma16g00467 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00571 Cma-Chr4:2906180 Cma16g00467 Cma-Chr16:2360646 4.68E-153 dispersed
Cma07g00931 Cma-Chr7:4471466 Cma16g00467 Cma-Chr16:2360646 2.88E-118 dispersed
Cma08g01294 Cma-Chr8:7852510 Cma16g00467 Cma-Chr16:2360646 1.70E-106 dispersed
Cma16g00467 Cma-Chr16:2360646 Cma17g00385 Cma-Chr17:2142683 1.03E-108 dispersed
Cma04g00630 Cma-Chr4:3234786 Cma16g00467 Cma-Chr16:2360646 0 transposed
Cma19g00753 Cma-Chr19:7486757 Cma16g00467 Cma-Chr16:2360646 1.05E-08 transposed
Cma16g00467 Cma-Chr16:2360646 Cma04g00629 Cma-Chr4:3229856 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69192 PF00069 Pkinase 3.90E-41 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00467 K09534 - csv:101216675 1065.83