Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00475 ATGTCGCTTCTCTGCAGTCTAATGTCCAATGATAGTCGAAACTATGACGCTCAGTTATTACTCGAGATGTCTAGACACTGTTCAGAGAATCCAACTCTGCTGCTTCTGGAGATGAAACAAGCATCTTCCAAATCCATCCATTATAGTTTGCTTTCCGCTACAGATGTAAGTATAATACACCAGGCTCGATTCTCGCCTGCCCGAGTACTTGATACAATCAGTTTTGAAGTTCTTGTGAAGGAATTGGTTCTGGTTGAGGATTTTTGCAGAGCCATGGAGGTAGAGGTGATGAAGATGATGAAGACGACGAAGAAGACGAAGTTGGTTTTGTTGATTGCAGTTCCAGTCATGGTGGTCGTGATATTGCAGCAATTTTGGTTGCCATCTTTGAACTTCAATCGGCTCTGGAGAACTGTTTCTCAACATGTAGGCTCCACAAATGATTCACACAGAAACGACGATGAATTCATCAATGGCCTTCTTCCTCCAGGCTTCGACCAAAAATCCTGTTTAAGCCGATACCAACTGAATCTCTACAGAAAACCTTCTCCCTACATACCCTCTTCCCCTCTCCTCTCTAAGCTCCGCCGCTATGAAGCCCTCCACCGCCGCTGTGGTCCCAATTCGCCATCCTTCCGCCGAGCTCTTGCCGGTCTAACTTCACCCACAAACTCCACATCCCTGCCGGAAGACTGCAAATACGCTGTGGTTTTAACCCGCGATGGCCTAGGCAACCGTATCCTCGCTATTATCTCCGCCTTCTTCTACGCTCTAATGTCCGATCGCGTCTTTCTAATCGACCGAGGCAACGCTCTTGATGATCTCTTCTGTGAACCCTTTCTCGGATCCTCGTGGATTCTGCCGTCGGATTTCCCTCTCCGCCGGGAATTTGGGTCGTTCCGCCAGTCCTTTCCAGGGTCTTTTGGCAACATTTTGAGAAATGGAATGTTGAAGAAAACAATCGAAGATTCGCCTGCGAGTTATTTGTATCTCCATCTATCTCACGACGCCAGCGATTACGACAAACTGTTTTACTGCGACCGGCAGCAGAATCTTCTGAAGAAGGTCCCATGGATGATTATGGAGACGAATAACTACCTGGTTCCCGGAATTTTTCTTGGTTCGTTTTTCAGAGAAGAGCTCAATAAACTCTTTCCGGCGAAGGACACTGTTTTCCACCATCTCGGTCGGTACCTCTTCCATCCGACGAACGGCGTCTGGGGGCTGATTTCGAGATCTTACAAGCCGTATCTCGCCAGAGCGAAAGAAATGTTAGGGATTCAGATCCGGAATTTTGGGTCGGAATCCGGTTCGTTTCAGGACCAGATGAATCAACTTCTAGCTTGCACACAGAAGAAGAAATTACTGCCGGATGTCGAGCAATCGTCGCCGGAGAAGTCGAATTCCACAGCGTCTCAGACGGTGAAAGTTGTGCTGGTGACGTCTCTGAGCTCTGAATACTCGGAAACCCTAAAGGAAATGTACTGGGAGCATGGGGGCGTCGACGGCGAGGTGGTGGCGGTGTACCAACCGAGCCACGAGGGGATTCAAAGCTCTAACAAAAAAATGCACAACCGGAAGGCACTGGCAGAGATGTACCTTCTGAGCTTGAGCGACGTGTTGGTGACGAGCGATTGGTCGACGTTTGGGTATGTGGCGCAGGGACTTGCCGGAGTGAAGCCATGGATGCTTTACAAGGCAGAGGATAAGGTGTTTCCGCCGTTGAATCAATGGCTGAAGTACAGAACGAGGAATGAGACAGGCGACTGGCCATGCCGGCGGGCGGTATCGATGGAGCCATGCCTGCACGTGCCGCCGGTGTGCGATTGCGATGAGATGAAGAGAAGAGATGGAGGGAATGAACTGCCGTTTGTGACGCATTGTGAAGATGCGAGTTGGGGCCTTAAGTTAGTTGATGAATTCAACTGA 1929 49.4 MSLLCSLMSNDSRNYDAQLLLEMSRHCSENPTLLLLEMKQASSKSIHYSLLSATDVSIIHQARFSPARVLDTISFEVLVKELVLVEDFCRAMEVEVMKMMKTTKKTKLVLLIAVPVMVVVILQQFWLPSLNFNRLWRTVSQHVGSTNDSHRNDDEFINGLLPPGFDQKSCLSRYQLNLYRKPSPYIPSSPLLSKLRRYEALHRRCGPNSPSFRRALAGLTSPTNSTSLPEDCKYAVVLTRDGLGNRILAIISAFFYALMSDRVFLIDRGNALDDLFCEPFLGSSWILPSDFPLRREFGSFRQSFPGSFGNILRNGMLKKTIEDSPASYLYLHLSHDASDYDKLFYCDRQQNLLKKVPWMIMETNNYLVPGIFLGSFFREELNKLFPAKDTVFHHLGRYLFHPTNGVWGLISRSYKPYLARAKEMLGIQIRNFGSESGSFQDQMNQLLACTQKKKLLPDVEQSSPEKSNSTASQTVKVVLVTSLSSEYSETLKEMYWEHGGVDGEVVAVYQPSHEGIQSSNKKMHNRKALAEMYLLSLSDVLVTSDWSTFGYVAQGLAGVKPWMLYKAEDKVFPPLNQWLKYRTRNETGDWPCRRAVSMEPCLHVPPVCDCDEMKRRDGGNELPFVTHCEDASWGLKLVDEFN 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2401539 2404269 - CmaCh16G004750.1 Cma16g00475 311073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00475 642 Gene3D - 230 278 - -
Cma16g00475 642 PANTHER FUCOSYLTRANSFERASE 2-RELATED 89 640 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma16g00475 642 Pfam Xyloglucan fucosyltransferase 142 610 IPR004938 GO:0008107|GO:0016020|GO:0042546
Cma16g00475 642 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 89 640 - -
Cma16g00475 642 Gene3D - 411 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00798 Cma-Chr1:4301842 Cma16g00475 Cma-Chr16:2401539 2.76E-172 dispersed
Cma13g01145 Cma-Chr13:8426670 Cma16g00475 Cma-Chr16:2401539 1.73E-84 dispersed
Cma16g00475 Cma-Chr16:2401539 Cma04g01674 Cma-Chr4:8413327 1.21E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00475 K13681 - csv:101222105 854.744