Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00496 ATGACTCGTAATAACGTCCTCATTAACATTGCCCTCTCTTCTCTCGTTCCTCTTTTTCTCGCTTTGCTCCTCGTCGTCATTCCTACCCCTCCTTTCCTTTCCGTCCTCGACGACTCCCTCAACTGCCACCACCACCACCACCATAAACCCTCGGCTGATGAAGAAGACCAAACGAGTATCGGTTCCATTTGTGACACCTTCCCAACCGCCCTTCTCCCACTAGAAACTGTCGACACTTCTGTTTTATGTGTTGACCTAAATGGATGCTGCAATTTTACAACTGTACAAGCAGCTGTCGACGCTGTGTTGAATATGAGCTCCAAACGAAGCTTAATATGGATCAACACTGGAATCTACTTTGAGAAGGTAATGGTTCCGAGATCGAAACCGAACGTGACATTTCAAGGACAAGGCTACAAAACCACAGCTATTGTTTGGAACGACACCGCCAATTCTTCACATGGCACATTTTACAGCGGCTCCGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCATGAATGTGGCGCCAATTCCAGGGCCGGGCGTCATCGGAGCACAGGCGGTGGCGATTCGGATCGGCGGAGACCAGGCGGCGTTTTGGAACTGCGGATTCTTCGGCGCTCAAGACACTCTCCACGATGACCGCGGCCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGAAACGGAAGATCCTACTACGAGAGTTGCCAGATGATTTCGATGGCGAATCCAGTTCCGCAAGGATCGAAGTTCGTGAACGGAGCCGTGACGGCGCACGGCAGAGCCTCCGCAGACGAGAACTCTGGATTTGCTTTTGTTAATTGCAGCATCGGTGGAACCGGCAGAGTGTGGCTCGGTCGCGCGTGGCGGCCGTTCTCTCGCGTCGTCTTTGCTAACACCGTCATGACGGATATTATTGCGTCGGAGGGATGGAATGACTTTAATGACCCCGCAAGGGACCAGACGATATTCTATGGAGAGTATAACTGCAGTGGAACAGGAGCCAACATGAGCGCAAGGGCTCCCTATGTTCAGAGGCTCAATGATACTCAAGCTTCCCCTTTCCTCAACCTCTCCTTCATCGACGCAGACCAATGGCTGCAACCCTATTAA 1149 50.83 MTRNNVLINIALSSLVPLFLALLLVVIPTPPFLSVLDDSLNCHHHHHHKPSADEEDQTSIGSICDTFPTALLPLETVDTSVLCVDLNGCCNFTTVQAAVDAVLNMSSKRSLIWINTGIYFEKVMVPRSKPNVTFQGQGYKTTAIVWNDTANSSHGTFYSGSVQVFSSNFIAKNISFMNVAPIPGPGVIGAQAVAIRIGGDQAAFWNCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSYYESCQMISMANPVPQGSKFVNGAVTAHGRASADENSGFAFVNCSIGGTGRVWLGRAWRPFSRVVFANTVMTDIIASEGWNDFNDPARDQTIFYGEYNCSGTGANMSARAPYVQRLNDTQASPFLNLSFIDADQWLQPY 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2537784 2540110 + CmaCh16G004960.1 Cma16g00496 311094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00496 382 Pfam Pectinesterase 84 375 IPR000070 GO:0030599|GO:0042545
Cma16g00496 382 PANTHER PECTINESTERASE 8-RELATED 40 382 - -
Cma16g00496 382 ProSitePatterns Pectinesterase signature 2. 230 239 IPR033131 -
Cma16g00496 382 Gene3D - 78 382 IPR012334 -
Cma16g00496 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 382 - -
Cma16g00496 382 SUPERFAMILY Pectin lyase-like 81 381 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01122 Cma-Chr15:7148399 Cma16g00496 Cma-Chr16:2537784 2.38E-89 dispersed
Cma16g00496 Cma-Chr16:2537784 Cma04g00770 Cma-Chr4:3911515 5.92E-85 dispersed
Cma16g00496 Cma-Chr16:2537784 Cma14g00246 Cma-Chr14:1065408 3.27E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00496 - - bhj:120090174 668.692