Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00499 ATGGCGCTACATTCATCCGAAAGCCTCGCCGGCGGAGAATCAGTAATCAGAGTTCAAAACTTAGTCGAAGCACAGCCGTCTCAGGTCCCGCCCCAATACATCCAGCCGCCGCATCACCGTCCTTCCGCCACTAGCACTTCCACTGACCTCAGGATTCCGGTGATCGACCTTTTCGGATTCGATCCGGACCATAGAGACGCCGTTCGAGGCGCCGTTGGGCGAGCATCCAGCGAATGGGGAGCTTTTCATGTCATCAATCATGGAATTCCTTCATCATTGTTGAGCCAGATGAGGACTGCGGCTCTCTCTTTCTTTAGAGACTGTCCCGTCTCTGATAAGCTCGCATACGCTTGCGATCCTAAATCCTTTGCTTCCGAGGGTTATGGCACACAAATGCTCGTCGATAAAGAAGTCGAATCGCAGGCTTCGGCGCTTGACTGGAGAGATTATTTCGATCACCATACGCTGCCGCTTTCACGCCGCAATCTTTCTAATTGGCCTCACTTTCCTTCCGGTTACAGGGAGCTTATGGCTCAGTACAGCGATTGTATGAAATTGCTTGCTCAGCGGCTCCTAGCCGTTATCTCTGAAAGTATTGGGCTGCCTTCGTCGTGGATGGAGGATGCCATCACTGGGATGGGTGGGGAAGAAAATTTTTATCAGAATATTACTGTCAGTTATTACCCTCCATGTCCTCAGCCTGGCTTGACGCTTGGTCTGCAAACCCATTCCGACATTGGCGCCATCACTCTACTAATACAAGATGATGTTGAGGGCCTTCAGGTTCTCAGCGGGCAAGGAGATTGGGTCACTGTTCAGTCTCTGTCTCCTAATGCCATTATCGTCATTTTGGCCGACCAAACTGAGATTTTAACTAATGGAAAGTGCAAGAGTGCGGAGCATAGAGTGACTACAAACTCTAGCAGGGCAAGACTCTCGATCTCTGCTTTTCATGATCCACCGAAGTCAGTAAAAATATCTCCGGCTGCAGAGCTTGTCAGTGAGTCTTCCCCCCTTAGATACCGCGAAGTTATTTTTGGAGATTATACATCATCATGGTACTCAAACGGCCCTCAAGGAAGAAGAAATCTGGATGCAATCAAGCTTCACAACTAG 1116 49.46 MALHSSESLAGGESVIRVQNLVEAQPSQVPPQYIQPPHHRPSATSTSTDLRIPVIDLFGFDPDHRDAVRGAVGRASSEWGAFHVINHGIPSSLLSQMRTAALSFFRDCPVSDKLAYACDPKSFASEGYGTQMLVDKEVESQASALDWRDYFDHHTLPLSRRNLSNWPHFPSGYRELMAQYSDCMKLLAQRLLAVISESIGLPSSWMEDAITGMGGEENFYQNITVSYYPPCPQPGLTLGLQTHSDIGAITLLIQDDVEGLQVLSGQGDWVTVQSLSPNAIIVILADQTEILTNGKCKSAEHRVTTNSSRARLSISAFHDPPKSVKISPAAELVSESSPLRYREVIFGDYTSSWYSNGPQGRRNLDAIKLHN 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2546331 2551268 + CmaCh16G004990.1 Cma16g00499 311097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00499 371 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 14 369 - -
Cma16g00499 371 Pfam 2OG-Fe(II) oxygenase superfamily 225 319 IPR044861 -
Cma16g00499 371 Pfam non-haem dioxygenase in morphine synthesis N-terminal 52 166 IPR026992 -
Cma16g00499 371 Gene3D - 13 356 IPR027443 -
Cma16g00499 371 SUPERFAMILY Clavaminate synthase-like 15 357 - -
Cma16g00499 371 PRINTS Isopenicillin N synthase signature 72 89 - -
Cma16g00499 371 PRINTS Isopenicillin N synthase signature 243 264 - -
Cma16g00499 371 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 218 320 IPR005123 -
Cma16g00499 371 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 369 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00499 - - - csv:101209302 635.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00151 Cma-Chr4:745244 Cma16g00499 Cma-Chr16:2546331 2.26E-79 dispersed
Cma15g00695 Cma-Chr15:3321048 Cma16g00499 Cma-Chr16:2546331 1.33E-61 dispersed
Cma16g00499 Cma-Chr16:2546331 Cma14g01630 Cma-Chr14:12197296 2.28E-61 dispersed
Cma16g00499 Cma-Chr16:2546331 Cma04g01113 Cma-Chr4:5747919 5.48E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g429 Blo02g01083 . . Bda08g00547 . . . . . Cmo16g00543 . . . . . . . . . . . . . . . . . . . . . Cone8ag0343 . . Cone9ag0737 . . . . . . . . . . . . . . . . Cma16g00499 . Car16g01149 . . . . . . . . . . . . . . . . . . . .
Vvi19g1041 . . . . . . . . Cmo16g00543 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00499 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008598 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00499 Cma_Chr16 FPKM 11.238012 10.327966 12.628147 11.22134 13.024572 13.261435 11.189018 13.944332 13.706107 15.074366