Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00501 ATGGACGCCATTTCTTCCCCTTTCCTCTCTGGAGGAAACCTCCTCCTCTCTCCGCCGACCTCCAAGTACAGGACCGCCGTTTCGACCGCCATATGCTCTGTACTCACCGAAGAAACCCCAAGAACCGTTAAAAAACCCGCCTCCCGACCAGATGCTGATTTTCCATCGCCGTCTTTGTCCCAGCGAGCTACTCACCCTCCGGCAGTGGCGAAGGGCTCTTCCACCAGACGTGTCGAGCCATCTGTACCGGCGAGCATCTTCAATGCCTTTGACGACTTGATCAACAACTTCATAAACCCGCCGGCGAATCCGTCGACGGATCCACGATACGTCCTTGCTGACAACTTCGCTCCCGTCGACGAGCTTCCACCGACGGAGTGTGAAGTCATTCAAGGTTCGTTGCCTTCATCTCTCAATGGTGCGTATATTCGTAACGGCCCGAACCCTCAATACCTTCCCCGTGGGCCCTACCACTTGTTCGACGGCGATGGCATGCTTCACTCTCTTCGAATCTCCAACGGCCGTGCCGTTCTGTGCAGCCGTTATGTGAAAACGTACAAGTACACTTTGGAGCGTGACGCTGGACATCCTGTTATCCCCAATGTATTCTCCGGCTTCAATGGCCTCATCGCCTCTGCCGCTCGCGGCGCCGTTACCGCCGGTCGGATGTTTACCGGCCAATTTAATCCGGCAAACGGGATTGGTCTTGCAAACACTAGTTTGGCTTTCTTCGGTGATCGTCTTTACGCCCTAGGTGAGTCCGATTTACCGTATCCGATTCGATTGACTCCGAACGGCGACATTGAAACTCTCGGCCGCCATGATTTTGACGGAAAGCTTTCTATGAGTATGACTGCTCATCCAAAAATCGATTACGATACGGGTGAGGCATTTGCGTTTCGGTATGGTCCTCTGCCTCCGTTCTTAACCTTCTTTCGATTCGACAAGAACGGAGCCAAACAGCCCGATGTGCCGATATTTTCGATGAATCGACCTTCGTTCCTGCACGATTTTGCAATTACTAAAAAGTACGCTGTATTTACAGAGATTCAGATCGGATTTAACCCTATGCAAATGATAGTAGAAGGACGCTCTCCAGTTGGAGCAGATCCTTCAAAAATTTCAAGAATAGGACTAATTCCACGATACGCTAACGACGAATCGAAGATGAAGTGGTTTGATGTACCTGGAGTTAACCTGGTTCACGCCATTAACGCTTGGGATGAAGAAGACGCTGTGATTCTGGTGGCGCCGAACATTCTTTCCGTCGAACACACGATGGAGAGGATGGATCTGGTTCACGCCTTAGTGGAGAAAATCAGAATCGACCTAAAAACAGGGATAATAACGCGGCGGCCGTTGTCGACCAGAAACCTAGACTTCGGAGTGATAAATCCGGTATACGTTGGGAAGAAGAATAGGTTCGTTTACGCCGGCGTTGGAGATCCGATGCCGAAGATTTCGGGAGTTGTGAAGCTCGACGTGTCTCAGGAAGAACGCCGAGACTGTATCGTCGCGACTAGGCTTTTCGGACCTAATTACTACGGCGGCGAGCCGTTTTTCGTGCCGAGGGAAAGGGAAAGTTCCGACGAAACGGCGGCGGAGGAGGACGACGGATATGTCGTCTCGTACGTCCACGATGAAAACTCGGGCGACTCAAGGTTCGTAGTCATGGACGCAAAGTCCCCGGAACTCGAGATTATCGCCACCGTGAAGCTGCCGCGGCGTGTCCCTTACGGCTTTCACGGCTTGTTTGTGAAAGAAAGTGACCTCTCTAAGCTATAA 1785 51.71 MDAISSPFLSGGNLLLSPPTSKYRTAVSTAICSVLTEETPRTVKKPASRPDADFPSPSLSQRATHPPAVAKGSSTRRVEPSVPASIFNAFDDLINNFINPPANPSTDPRYVLADNFAPVDELPPTECEVIQGSLPSSLNGAYIRNGPNPQYLPRGPYHLFDGDGMLHSLRISNGRAVLCSRYVKTYKYTLERDAGHPVIPNVFSGFNGLIASAARGAVTAGRMFTGQFNPANGIGLANTSLAFFGDRLYALGESDLPYPIRLTPNGDIETLGRHDFDGKLSMSMTAHPKIDYDTGEAFAFRYGPLPPFLTFFRFDKNGAKQPDVPIFSMNRPSFLHDFAITKKYAVFTEIQIGFNPMQMIVEGRSPVGADPSKISRIGLIPRYANDESKMKWFDVPGVNLVHAINAWDEEDAVILVAPNILSVEHTMERMDLVHALVEKIRIDLKTGIITRRPLSTRNLDFGVINPVYVGKKNRFVYAGVGDPMPKISGVVKLDVSQEERRDCIVATRLFGPNYYGGEPFFVPRERESSDETAAEEDDGYVVSYVHDENSGDSRFVVMDAKSPELEIIATVKLPRRVPYGFHGLFVKESDLSKL 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2555440 2557224 + CmaCh16G005010.1 Cma16g00501 311099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00501 594 Pfam Retinal pigment epithelial membrane protein 118 587 IPR004294 GO:0016702
Cma16g00501 594 PANTHER BETA-CAROTENE DIOXYGENASE 64 593 IPR004294 GO:0016702
Cma16g00501 594 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 64 593 - -
Cma16g00501 594 MobiDBLite consensus disorder prediction 39 77 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00501 K09840 NCED; 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] - csv:101220226 1024.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00593 Cma-Chr5:2935895 Cma16g00501 Cma-Chr16:2555440 5.13E-23 dispersed
Cma16g00501 Cma-Chr16:2555440 Cma17g00115 Cma-Chr17:563805 3.56E-103 dispersed
Cma17g00534 Cma-Chr17:4067500 Cma16g00501 Cma-Chr16:2555440 1.75E-11 dispersed
Cma01g01436 Cma-Chr1:10099857 Cma16g00501 Cma-Chr16:2555440 1.64E-45 transposed
Cma17g00958 Cma-Chr17:7117222 Cma16g00501 Cma-Chr16:2555440 9.03E-115 transposed
Cma16g00501 Cma-Chr16:2555440 Cma04g00643 Cma-Chr4:3294449 2.54E-118 wgd
Cma16g00501 Cma-Chr16:2555440 Cma04g00605 Cma-Chr4:3075614 1.10E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g972 . . . . . . . . . Cmo16g00546 . . . . . Cpe14g00423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00501 . . Cpe01g00547 . . . . . . . . . . . . . . . . Csa04g00718 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007169 1 1 3 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00501 Cma_Chr16 FPKM 0.764146 0.572874 4.592746 5.643819 13.265389 12.488832 9.432892 1.050353 0.788831 1.256406