Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00503 ATGGATATGGCTGACCCTCAGAACGACGCCGTTCTTGCCTACCCTCACAATAACCTCAATAATAATAATAATCTCCACCAGCTTCCCCTCCTCACTGTTACTCTCAAGTTTGAAGAAGTTGTTTACAAAGTGAAATTAGAAGGGAAAGGCGGCGGCGGCGGCGGCGGCGGTGGCGGCTGCTGCGGCGGTGGCGGTTCATGGGGTGGCACTAGAGAAAAAACCATTCTAAACGGAATAAGTGGAGTTGTTTTCCCCGGCGAAATACTCGCCATGCTTGGCCCTTCCGGCAGTGGAAAAACCACCCTTTTGACTGCACTTGGCGGCCGTCTCTCCGGCAAACTCTCCGGAAAAATCACTTATAATGGCCACCCATTTTCCGGCGCTACCAAGCGCCGGACCGGCTTCGTCGCCCAAGACGACGTTTTATACCCTCATTTAACCGTCGCCGAAACCCTTCTCTTCACCGCCCTCCTCCGCCTTCCCTCCTCTCTTACTGCCGACGAAAAAGCCCAAGCCGTTGAGCGAGTCATCTCCGAGTTGGGTCTCACTCGCTGCCGCAACAGCATGATCGGCGGCCCACTTTTCCGAGGAATCTCCGGCGGAGAGAAAAAAAGAGTCAGTATCGGTCAAGAGATGCTGATTAACCCTAGCTTGCTTTTGCTCGACGAACCCACCTCCGGGTTGGACTCCACAACCGCCATGAGAATTATCACCACCGTTAAACGCCTCGCCGCCGGTGGTCGGACCGTTGTCACGACAATTCATCAGCCGTCCAGCCGCCTTTACCACATGTTTGATAAGGTTGTTTTGCTGTCTGAAGGCAGCCCAATTTATTACGGCGCAGCTTCAACCGCCATGAATTATTTCTCCTCCATTGGATTCTCTACCTCCATTACCATCAATCCAGCCGATCTCCTTCTCGATCTTGCAAATGGAATCGGCCCTGATTCGAAATATACAAACGACGGAGGAGAGAACATGGAACAAGAACAAAAGGGTGTGAAAGAAGTCCTAATTTCAGCTTATGATAAGAACATTTCCTCCGCATTGAAGGATGATCTTTGTAGTTTGGATGCTAATAACTTCACCAACTATGCAAAAGATGCCTCAAAGAGAGAGAGGAGATCAAGAGAAGAGTGGTGCACGAGCTGGTGGTATCAATTCAGAGTGCTATTGCAAAGAGGGCTAAAGGAGAGAAGGTATGACGCCTTCAACAAGCTAAGGATCTTTCAAGTCATAAGTGTAGCCATTCTTGGTGGACTCCTTTGGTGGCACACTCCGACATCCCACATCGAAGATCGTATAGCATTGTTGTTCTTCTTCTCCGTCTTCTGGGGCTTCTACCCGCTATACAACGCCGTATTCACCTTCCCACAAGAACGCACCATGCTAATCAAAGAGCGATCCTCCGGCATGTACCGTCTCTCCTCCTACTTCCTCGCAAGAACCATTGGTGACCTTCCTTTAGAACTCGCTCTCCCGACCGCCTTCGTTTTCATAATCTACTTCATGGGTGGCCTCAACCCTCACCCTCCCACCTTCCTCCTCTCCCTCCTCGTCGTCCTCTATAGCGTCCTTGTCTCGCAGAGCCTCGGCTTGGCATTCGGTGCCATTCTCATGGATGTCAAGCAAGCCACGACGCTCGCCTCCGTCACGACGCTCGTCTTCCTCATCGCTGGCGGCTACTACATTCAACAAATTCCTCCGTTCATTGTGTGGCTTAAGTATCTCAGCTATAGCTTCTATTGCTACAAGCTTCTGTTGGGTGTACAGTACAAAAACGACGACGTTTATGAGTGTGGGAAAGGGGAGTTTTGTCGGGTGGCAGATTTTCCGGCGGTTAAGTCGGTCGGGTTGGACCGGCTTTGGGTTGATGTTTGTATTATGGCGCTCATGCTGGTTGGGTATCGGCTGGTTGCTTTCTTGGCTCTTCATAGGGTGAGATTGAGATGA 1953 50.9 MDMADPQNDAVLAYPHNNLNNNNNLHQLPLLTVTLKFEEVVYKVKLEGKGGGGGGGGGGCCGGGGSWGGTREKTILNGISGVVFPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGHPFSGATKRRTGFVAQDDVLYPHLTVAETLLFTALLRLPSSLTADEKAQAVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAMRIITTVKRLAAGGRTVVTTIHQPSSRLYHMFDKVVLLSEGSPIYYGAASTAMNYFSSIGFSTSITINPADLLLDLANGIGPDSKYTNDGGENMEQEQKGVKEVLISAYDKNISSALKDDLCSLDANNFTNYAKDASKRERRSREEWCTSWWYQFRVLLQRGLKERRYDAFNKLRIFQVISVAILGGLLWWHTPTSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERTMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYFMGGLNPHPPTFLLSLLVVLYSVLVSQSLGLAFGAILMDVKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSFYCYKLLLGVQYKNDDVYECGKGEFCRVADFPAVKSVGLDRLWVDVCIMALMLVGYRLVAFLALHRVRLR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2563264 2566503 - CmaCh16G005030.1 Cma16g00503 311101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00503 650 CDD ABCG_EPDR 73 280 - -
Cma16g00503 650 Pfam ABC-2 type transporter 255 320 IPR043926 GO:0140359
Cma16g00503 650 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 646 - -
Cma16g00503 650 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 298 IPR003439 GO:0005524
Cma16g00503 650 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 30 646 - -
Cma16g00503 650 Pfam ABC transporter 76 226 IPR003439 GO:0005524
Cma16g00503 650 Gene3D - 66 292 IPR027417 -
Cma16g00503 650 SMART AAA_5 85 275 IPR003593 -
Cma16g00503 650 Pfam ABC-2 type transporter 386 592 IPR013525 GO:0016020|GO:0140359
Cma16g00503 650 ProSitePatterns ABC transporters family signature. 198 212 IPR017871 GO:0005524
Cma16g00503 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 292 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00503 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101219742 1124.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00550 Cma16g00503 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01547 Cma-Chr4:7841951 Cma16g00503 Cma-Chr16:2563264 0 dispersed
Cma06g00550 Cma-Chr6:2606979 Cma16g00503 Cma-Chr16:2563264 3.02E-172 dispersed
Cma09g01112 Cma-Chr9:6098294 Cma16g00503 Cma-Chr16:2563264 0 dispersed
Cma14g00381 Cma-Chr14:1730080 Cma16g00503 Cma-Chr16:2563264 1.00E-175 dispersed
Cma15g01421 Cma-Chr15:8992647 Cma16g00503 Cma-Chr16:2563264 0 dispersed
Cma16g00503 Cma-Chr16:2563264 Cma16g00791 Cma-Chr16:4359035 0 dispersed
Cma16g00950 Cma-Chr16:7357880 Cma16g00503 Cma-Chr16:2563264 2.37E-167 dispersed
Cma16g00503 Cma-Chr16:2563264 Cma04g00602 Cma-Chr4:3067272 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00503 Cma_Chr16 FPKM 34.228992 36.849445 49.403946 50.661076 3.810865 4.448126 4.402727 0.160601 0.08354 0.08505