Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00511 ATGGGAGCCAGTGGAAGTAAGTTGTCGAGTAGTTCGCCGCCGCCGCCGCCACCACCGTCGGCGGCGGCGGCGAATCTCTCATGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAGGCCGTAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTGTAAAAGTGAGAACAAAAAGAATGCTCATGATTATTCATCTGCAAATCAGACTGATCAAGCTAATGATCAGATGAAAATTGAGGGTTACAGAAGGGTCAAAGCTGAGGAATCTCTTGAAATGCCTTGCGTATCATCAAATGTTGAGTTTGATGGATGGGATCAAGCAGGTGTTGCTGTTGCAGCAGCTCCCAGAGCTGGAAGTACCTCTGCTCGTGTATCGTCCCTGCAATCGTTGAACCCTTCGAGTAGCTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATATAAGCTTCAGACTTAGTAGAGCAAGCAGTTTAGGATCGTCTAGATCTTTTCCTGTGTCTTCAACAAATCTTTCAATGTTGAACGATGAAGCCGAGCTTCATTTATCAGACAGACCTGCTGGAGGCTTGGGTGCTCAAGATGAAACTCAGCAAGGTAGTGACTTGCTTCCTGCGTCGCTGGCTAGTGCAACTCGTGCTCAATGTTATGGAGATAGTCCTGCCAATTTTAGGCTAGATACACAAAATCTGAGTCTTTCTGATAACTTACAAGACAATCAGTCAGTTGGAAACCTTTCCCATGCTCAAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGGCGGACTGGATCTAGGGAACCGGTTGAACGCAATTTTCGTTTCAGTCGGACCCTTAGTGTTGGAAGACTGCGTGATAGAGTTCTTCGTAGATCATCATTGTCTGATTTCACATTTTGTCCTCCACAACAAGATGGTGAAGAGAGAGATGCAAGTCACAGTGGTGATGGTGGACATGTCTGGACTGCTGAGACGAGGGCGTTGGCATCTGTAGATAATGCTATGACCTCGCCAACAACATCGGGTTATCCAGCTTCTAGTCTATCCAGTTCGTTGTTCAGCACCCAAGGTTTTGAAATGGAAACTACACGACCTAGAGAAGCTAGATATCATGATCTGCTGGAACACAGATCAAATTTCCTCGAACGGAGAAGACGAATACGGTCCCAGGTTCGTGCCTTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGTCATGAGAGATCGTGCATATTATCCGGTCAACATAGAACCAGTCATTGTACTTGTCGTATCAACAATCGTGACACAAATGTAAGCGATAACACGAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCGTCTTCTTTTGGCTCTCTGCCTGCTCCGAACGCTGTTGTAGATTCTTTGCCTGTTAAATTTCATTCCAAGTTGCAAAAGCATCAAAACGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGAGGAAGGGGATAGCATGAGAGTGTTGCCTTGCCATCATGAATTTCACGCAGCATGTGTCGACAAGTGGCTGAAGGAGATCCATAGGGTGTGCCCGCTCTGTCGAGGGGACATATGCAGCAGATCTGATGTGTTATCAGACGATGTTAAGTGA 1737 46.52 MGASGSKLSSSSPPPPPPPSAAAANLSCSGRIRRGRSKGRRVFQSACLGTPSGSHHSDNDDNDCKSENKKNAHDYSSANQTDQANDQMKIEGYRRVKAEESLEMPCVSSNVEFDGWDQAGVAVAAAPRAGSTSARVSSLQSLNPSSSFLSRFSFIPGNISFRLSRASSLGSSRSFPVSSTNLSMLNDEAELHLSDRPAGGLGAQDETQQGSDLLPASLASATRAQCYGDSPANFRLDTQNLSLSDNLQDNQSVGNLSHAQTLPENESSEIRQSDRRTGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQDGEERDASHSGDGGHVWTAETRALASVDNAMTSPTTSGYPASSLSSSLFSTQGFEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTSHCTCRINNRDTNVSDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSFGSLPAPNAVVDSLPVKFHSKLQKHQNEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDVLSDDVK 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2626985 2630358 - CmaCh16G005110.1 Cma16g00511 311109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00511 578 MobiDBLite consensus disorder prediction 1 88 - -
Cma16g00511 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 485 568 IPR013083 -
Cma16g00511 578 MobiDBLite consensus disorder prediction 56 72 - -
Cma16g00511 578 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 570 - -
Cma16g00511 578 SMART ring_2 521 562 IPR001841 -
Cma16g00511 578 CDD RING-H2_PA-TM-RING 520 563 - -
Cma16g00511 578 MobiDBLite consensus disorder prediction 73 87 - -
Cma16g00511 578 SUPERFAMILY RING/U-box 503 569 - -
Cma16g00511 578 Pfam Ring finger domain 520 563 IPR001841 -
Cma16g00511 578 MobiDBLite consensus disorder prediction 268 283 - -
Cma16g00511 578 ProSiteProfiles Zinc finger RING-type profile. 521 563 IPR001841 -
Cma16g00511 578 MobiDBLite consensus disorder prediction 256 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00666 Cma-Chr3:5563097 Cma16g00511 Cma-Chr16:2626985 4.54E-09 dispersed
Cma10g00498 Cma-Chr10:2278442 Cma16g00511 Cma-Chr16:2626985 2.44E-47 dispersed
Cma11g00498 Cma-Chr11:2370688 Cma16g00511 Cma-Chr16:2626985 9.85E-46 dispersed
Cma16g00511 Cma-Chr16:2626985 Cma06g01177 Cma-Chr6:7922836 3.01E-13 dispersed
Cma16g00511 Cma-Chr16:2626985 Cma04g00597 Cma-Chr4:3007035 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00511 - - csv:101213468 906.746