Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma16g00512 | ATGGATTGGGCATTCGTCCGCAAAGCTTGGGACAAATGGGCTTCCGGCAGCATTGGCAGCTTCGGCCAGCCATTGAAAGCTGCCCTGTTGATCAATTATGATCCAACTGGACCTTCCCGTTTGCTTTCGACCATTGCAGAACAAGAAGGAATATTGCTTAATCCTATAGAATTGAATCAGTTTATCGATTTCATCAAACGTGACAAACCCCAAAATGAGAGTTTCAGCATCGGCTCAAATCAATACATAATGACATCAGTCCATGAGAATTGGTTTTGTGCAAGGTGCATGAACACTATAAAGCATGCTGGTGAAGGCGTTGTAATAGTGCAAACAACAGCCTTTATTTTGGTTGCTATGTATGATGGTTCGATTGCAGCAGCATCTCGCGCTATGGCGTCTGCCGATCTGTTATCTTGGCAGTTAGGCAGGAAAAATCTTTAG | 444 | 43.92 | MDWAFVRKAWDKWASGSIGSFGQPLKAALLINYDPTGPSRLLSTIAEQEGILLNPIELNQFIDFIKRDKPQNESFSIGSNQYIMTSVHENWFCARCMNTIKHAGEGVVIVQTTAFILVAMYDGSIAAASRAMASADLLSWQLGRKNL | 147 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 16 | 2632384 | 2634969 | - | CmaCh16G005120.1 | Cma16g00512 | 311110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma16g00512 | 147 | PANTHER | OS05G0241400 PROTEIN | 1 | 147 | - | - | |
| Cma16g00512 | 147 | Pfam | Profilin | 43 | 131 | IPR005455 | GO:0003779 | |
| Cma16g00512 | 147 | Gene3D | Dynein light chain 2a, cytoplasmic | 9 | 140 | - | - | |
| Cma16g00512 | 147 | SUPERFAMILY | Profilin (actin-binding protein) | 10 | 132 | IPR036140 | - | |
| Cma16g00512 | 147 | PANTHER | OS05G0241400 PROTEIN | 1 | 147 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma16g00512 | Cma-Chr16:2632384 | Cma04g00596 | Cma-Chr4:3003989 | 1.06E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma16g00512 | - | - | csv:105435190 | 278.485 |