Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00513 ATGGCCAGAGAAAACTTCGGTTTATGGCTATTTTTGGTTGCATCGCTGCAGTTTTTCCTTAGAACACAGTGTATTAATGTGGGGATTACTTATGTTCAAGAAGCTGGTATCAAAGGAGGCGTTTGTTTGGATGGAAGTCCTCCAGCGTATCATTTCAGCGAAGGGTTCGGCGCTGGGATCGATAATTGGTTGATACAACTCGAGGGAGGAGGATGGTGCAACAATGTCACGACCTGTCTCCAACGCAGGGACACTCGTTTAGGCTCGTCTAGGAAAATGATTACAGTTCTTGCGTTCTCGGGGATTTTGAGCAATAAACAAAAATTCAATCCAGATTTTTATAACTGGAACAGAATCAAGGTTCGGTACTGTGATGGATCTTCTTTCACTGGAGATGTTGAAGCGGTTGATCCTGCTACCAATCTGCATTTCAGAGGAGCAAGAGTTTTTCGTGCTATCATTGAGAACTTACTCGCCAAAGGAATGAAGAATGCGAAGAACGCTATTCTCTCCGGTTGTTCCGCGGGCGGATTAAGTTCGATTTTGAATTGTGATCATTTCAAATCTCTACTTCCTTCTACTACTAAAGTAAAGTGCCTCTCAGATGCTGGATACTTCATTAACGCAAAAGATGTCTCTGGCACACAGCACATTGCAGACTTCTACAGCGACGTAGTTGCTACCCATGCTTCTGCTAAGAATTTGCCTATATCATGCACATCAAAAATGAAACCAGAGATGTGTTTCTTTCCCCAAAACGTGGTTCAGCTCATTCAGACACCAATATTTCTTGTAAATGCAGCCTATGATTCATGGCAGATCAAGAACATACTGGCGCCTGGCGTCGCCGATCCGCATGGTACTTGGCACAGCTGCAAGCTTGACATCAAGAACTGCTCGCCTATTCAGCTACGAACCATGCAAGATTTCAGGGTTCAGTTCTTGAGTGCATTGAATGGCGTTGGAAGTTCTTTATCTAGAGGATTGTTCATAGATTCTTGCTATGCACATTGCCAAACCGAAACGCAGGAGACATGGCTACGAGCAGACTCTCCTACGCTGAGTAAGACGACCATTGCAAAGGCAGTTGGAGACTGGTATTTCGACAGGAGTCCGTTCCAGAAGATCGACTGTCCTTACCCGTGCAACCCGACATGCCACAACCGCATTTTCGAAGCGAAAGATAACCTCGAATGA 1197 44.95 MARENFGLWLFLVASLQFFLRTQCINVGITYVQEAGIKGGVCLDGSPPAYHFSEGFGAGIDNWLIQLEGGGWCNNVTTCLQRRDTRLGSSRKMITVLAFSGILSNKQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPATNLHFRGARVFRAIIENLLAKGMKNAKNAILSGCSAGGLSSILNCDHFKSLLPSTTKVKCLSDAGYFINAKDVSGTQHIADFYSDVVATHASAKNLPISCTSKMKPEMCFFPQNVVQLIQTPIFLVNAAYDSWQIKNILAPGVADPHGTWHSCKLDIKNCSPIQLRTMQDFRVQFLSALNGVGSSLSRGLFIDSCYAHCQTETQETWLRADSPTLSKTTIAKAVGDWYFDRSPFQKIDCPYPCNPTCHNRIFEAKDNLE 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2635616 2639209 - CmaCh16G005130.1 Cma16g00513 311111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00513 398 PANTHER PECTIN ACETYLESTERASE 7 391 - -
Cma16g00513 398 Pfam Pectinacetylesterase 23 372 IPR004963 GO:0016787
Cma16g00513 398 PANTHER NOTUM-RELATED 7 391 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00121 Cma-Chr16:561081 Cma16g00513 Cma-Chr16:2635616 5.63E-135 dispersed
Cma16g00513 Cma-Chr16:2635616 Cma18g01251 Cma-Chr18:9760140 2.95E-125 dispersed
Cma10g01190 Cma-Chr10:8792600 Cma16g00513 Cma-Chr16:2635616 5.74E-143 transposed
Cma11g01184 Cma-Chr11:6960985 Cma16g00513 Cma-Chr16:2635616 2.52E-150 transposed
Cma16g00513 Cma-Chr16:2635616 Cma04g00595 Cma-Chr4:2999765 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00513 K19882 - csv:101214431 767.303