Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00522 ATGGCGGCCATTTCAATCTTCTTCTATTTCTTTCTTTTTTCCTTCTCCGTATCAGCCACCGGTCGCGGTGGTGGAAATGGCTTCACCACCTCTATAATCCACCGTGATTCCCTTCTCTCTCCTCTCCACAACCCATCTGTCTCCCACTACGAACGGCTTACCGGTGCCTTCAACCGCTCTTTCTCCCGTTCCACCACCCTCACCAATCGGGCCGCCACCGTCTCCACTGGCGGCGTTCATTCTCCGCTCATACCTGACAGCGGCGAGTTCTTAATTTCCCTCTCTATTGGAACCCCGCCGGTTGATTTCACCGCCATCGCCGACACTGGCAGTGACCTGACGTGGACACAATGTTTGCCATGTGTCAAATGCTTCAACCAATCAAATCCCATTTTTAATCCACATCGATCATCCTCTTATAGCAACGTGTCTTGCACGTCTGATACTTGCAACTCCATCGTCAGCCACCGTTGTGGTCCCGACCTCAAAACCTGCACCTATGGCTACAGCTACGGAGACCAATCCTTCACGCATGGTGACCTGGCATCTGAGAAAATTACCATTGGGTCCTTCAAACTCAACAAGGTAGTCATTGGATGCGGCCACGAAAATGGCGGCACTTTCCTCGGAGAGACCTCGGGGATCGTCGGACTCGGCGGCGGCCCTCTCTCTTTGGTTTCGCAACTGAACACAATTGCCGCCGTCAAACGGCGGTTCTCGTATTGCTTGCCGACGTTCTTCAGCGACGCGAATATCACAGGCAAAATAAGCTTCGGTGAAGAAGCTGCCGTGTCGGGGCGAAAAGTGGTTTCTACCCCTCTCGTGCAGAAACATCCTGATACATACTATTTCTTGACTCTTGAAGCGGTTTCGATTGCTAACAAGCGGTTTGAGGTTGCAAACAACATGTCGTCTGCAGTAGTAGAAGGGAATATCATTATTGATTCCGGTACGACATTGACACTTTTGCCCCCGAATTTATACGACGGCGTCGTTTCGACTTTGGCAAAAGTTGTTAAAGCGAAGCAGGTGAATGATCCAACTGGGATTTTGGAACTCTGTTATGGTGTGAGCAGCGTTGACGACTTGAATATTCCGATCATTACGGCACATTTTGTTGGTGGTGCCGCCGTAGAGTTGCAGTCGGAGAATACATTTGCTTTGGTAAATGAAGATGTGGCTTGTTTGACTTTGGCACCGGCGATGAAATTTGCCATTTTTGGGAACTTGGCGCAGGTTAACTTTTTAGTCGGATATGATCTGGACCGGAAGACGGTGTCGTTTAAACGTACTGTTTGTGGTTAG 1305 49.73 MAAISIFFYFFLFSFSVSATGRGGGNGFTTSIIHRDSLLSPLHNPSVSHYERLTGAFNRSFSRSTTLTNRAATVSTGGVHSPLIPDSGEFLISLSIGTPPVDFTAIADTGSDLTWTQCLPCVKCFNQSNPIFNPHRSSSYSNVSCTSDTCNSIVSHRCGPDLKTCTYGYSYGDQSFTHGDLASEKITIGSFKLNKVVIGCGHENGGTFLGETSGIVGLGGGPLSLVSQLNTIAAVKRRFSYCLPTFFSDANITGKISFGEEAAVSGRKVVSTPLVQKHPDTYYFLTLEAVSIANKRFEVANNMSSAVVEGNIIIDSGTTLTLLPPNLYDGVVSTLAKVVKAKQVNDPTGILELCYGVSSVDDLNIPIITAHFVGGAAVELQSENTFALVNEDVACLTLAPAMKFAIFGNLAQVNFLVGYDLDRKTVSFKRTVCG 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2667114 2668418 + CmaCh16G005220.1 Cma16g00522 311120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00522 434 Pfam Xylanase inhibitor C-terminal 283 429 IPR032799 -
Cma16g00522 434 ProSiteProfiles Peptidase family A1 domain profile. 90 429 IPR033121 -
Cma16g00522 434 Gene3D Acid Proteases 259 434 IPR021109 -
Cma16g00522 434 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 312 323 IPR001969 GO:0004190|GO:0006508
Cma16g00522 434 SUPERFAMILY Acid proteases 85 433 IPR021109 -
Cma16g00522 434 CDD pepsin_A_like_plant 89 433 IPR034161 -
Cma16g00522 434 PANTHER OS07G0603500 PROTEIN-RELATED 7 433 - -
Cma16g00522 434 Pfam Xylanase inhibitor N-terminal 90 259 IPR032861 -
Cma16g00522 434 Gene3D Acid Proteases 71 258 IPR021109 -
Cma16g00522 434 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Cma16g00522 434 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Cma16g00522 434 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 7 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00522 - - K01381 cmax:111483445 847.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00589 Cma-Chr4:2981869 Cma16g00522 Cma-Chr16:2667114 3.33E-50 dispersed
Cma04g00590 Cma-Chr4:2984155 Cma16g00522 Cma-Chr16:2667114 7.05E-77 dispersed
Cma16g00522 Cma-Chr16:2667114 Cma17g00053 Cma-Chr17:228580 4.72E-100 dispersed
Cma03g00106 Cma-Chr3:1100733 Cma16g00522 Cma-Chr16:2667114 5.52E-80 transposed
Cma08g00919 Cma-Chr8:5721447 Cma16g00522 Cma-Chr16:2667114 0 transposed
Cma10g00382 Cma-Chr10:1750214 Cma16g00522 Cma-Chr16:2667114 2.92E-51 transposed
Cma16g00522 Cma-Chr16:2667114 Cma04g00588 Cma-Chr4:2979813 1.74E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00522 Cma_Chr16 FPKM 0.065134 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0