Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00523 ATGACCCGAGGAAAACAAAAGATCGAAGCTCAGAGGCGAAATGCGGAGAAAAATCAGAAGCAGAAAGGCTCGCAGTTCGAGGCTAGAGCCGTTGCCCTTAAAGTCATCTGCCCTATTTGCAAGGTACAACTAGCAAATCATAACCAATTGGGTGATCACTATGCCTCCAAACATCCGAAGGAAAAGCCACCATCCTCCGTTGTTTTAGTCCGTGAGCAGTTGTTGTTGAATGGAGCTCTGTTTCTAGTTTGTGATTTACGAACTATTGTGAGTGAGTTGATTGAAGGGGGATTTAAGATCATGCCTCAAGAACAGAGAGGCCCGATGAGTCGAAGCCTTTCGAGAAGGCGTTCCTTCCGAAATGAAGTATTGAATAGGGATGATAGGGGGTGGACTTCACTCCACATTGGTGCGCGAAAGGGTGACCTTAAAGAGGTGAAGCGTCTGCTGAATGAAGGAATGGATGTGAATGCAGAAGCATGGGGCCCCAAATCGAAGGGGTTGACACCCCTTCACCTTGCTGCGGAGGGTGGGCATCTTGATTTAATGGATGAATTGCTTGAACGTGGTGCCAACATTGATGCTAGAACCAAAGGGACACCTCTGCACAGTGCAGCCAAAGAGAGAAGGAAGGAAGCTGTGAAGTTCCTCGTGGAGAATGGAGCTTTCTTGCCTGATGACATAAATGACTGCAGATTTAATCCTCCACTGCACTACTGTCCCGGCCTCGAGTGGGCGTACGAGGAGGTCAAGCGTCTTCAACATTACAATGGTTCGTCTAGTGAGACATCTTGCAGCTCTGAGAGCTGA 810 48.27 MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPKEKPPSSVVLVREQLLLNGALFLVCDLRTIVSELIEGGFKIMPQEQRGPMSRSLSRRRSFRNEVLNRDDRGWTSLHIGARKGDLKEVKRLLNEGMDVNAEAWGPKSKGLTPLHLAAEGGHLDLMDELLERGANIDARTKGTPLHSAAKERRKEAVKFLVENGAFLPDDINDCRFNPPLHYCPGLEWAYEEVKRLQHYNGSSSETSCSSES 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2669285 2675145 + CmaCh16G005230.1 Cma16g00523 311121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00523 269 Coils Coil 5 25 - -
Cma16g00523 269 Gene3D - 1 66 IPR026939 -
Cma16g00523 269 SMART ANK_2a 197 230 IPR002110 GO:0005515
Cma16g00523 269 SMART ANK_2a 129 158 IPR002110 GO:0005515
Cma16g00523 269 SMART ANK_2a 166 195 IPR002110 GO:0005515
Cma16g00523 269 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 106 268 - -
Cma16g00523 269 PANTHER ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 1-LIKE 106 268 - -
Cma16g00523 269 MobiDBLite consensus disorder prediction 1 23 - -
Cma16g00523 269 SUPERFAMILY Ankyrin repeat 126 240 IPR036770 -
Cma16g00523 269 ProSiteProfiles Ankyrin repeat region circular profile. 129 158 - -
Cma16g00523 269 ProSiteProfiles Ankyrin repeat profile. 129 161 IPR002110 GO:0005515
Cma16g00523 269 SUPERFAMILY Expressed protein At2g23090/F21P24.15 1 64 - -
Cma16g00523 269 ProSiteProfiles Ankyrin repeat region circular profile. 166 198 - -
Cma16g00523 269 Pfam Ankyrin repeats (3 copies) 134 222 IPR002110 GO:0005515
Cma16g00523 269 Gene3D - 109 264 IPR036770 -
Cma16g00523 269 ProSiteProfiles Ankyrin repeat profile. 197 222 IPR002110 GO:0005515
Cma16g00523 269 ProSiteProfiles Ankyrin repeat region circular profile. 197 222 - -
Cma16g00523 269 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Cma16g00523 269 PRINTS Ankyrin repeat signature 167 182 IPR002110 GO:0005515
Cma16g00523 269 PRINTS Ankyrin repeat signature 213 227 IPR002110 GO:0005515
Cma16g00523 269 ProSiteProfiles Ankyrin repeat profile. 166 198 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00523 - - - cmax:111481662 287.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00523 Cma-Chr16:2669285 Cma05g00915 Cma-Chr5:7266183 3.52E-06 dispersed
Cma04g00585 Cma-Chr4:2967658 Cma16g00523 Cma-Chr16:2669285 4.00E-39 transposed
Cma15g01020 Cma-Chr15:6305934 Cma16g00523 Cma-Chr16:2669285 3.96E-10 wgd
Cma16g00523 Cma-Chr16:2669285 Cma04g00582 Cma-Chr4:2958878 1.93E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g916 Blo02g01165 . . Bda08g00449 Bpe05g00711 Bpe07g00055 . . . Cmo16g00572 . . . . . Cpe14g00444 . . . . . . . . . . . . . . . . . Cone6ag0873 Cone9ag0879 . . . . . . . . . . Bma05g00893 . . . . . Cma16g00523 . . Cpe01g00525 . . . . . . . . . . . . . . . . Csa04g00688 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005963 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00523 Cma_Chr16 FPKM 15.254996 15.154179 8.777875 10.729674 10.638788 9.83154 10.01 13.788359 14.845903 16.305393