Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00526 ATGCCGGGTCTCGTCTCCGTCAAAACCCCGCCGGACACTCCGCCGCTACGGATCTCCGTCCCCGACACGCCGCCGGTGTCGAATCATCGAACCCCATCTCCTCTAACGAACAAACAGCCCTCTCCATCTTCTTCCCGATCTACGAACGGGAAGAAGAAGCTTCAACCGGAGAGTCCGACGGCGACCCAATGTCCGCCGGATTCTTCTCTCGACAACCCCGATCTTGGGCCTTTTCTTCTGAAGCTCGCTCGCGACACCATTGCCTCTGGTGACGGCCCAAACAAAGCCCTTGATTATGCGATCCGTGCATCGAAGTCGTTCGAGCGGTGCGCTGTGGATGGGGAGCCGAGCCTTGACCTGACCATGAGCCTCCATGTTCTGGCTGCCATTTATTGTAGCTTAGGCCGGTTCGAGGAGGCGGTGCCGGTTCTTGAACAGGCGATTCAGGTTCCTGACATTGGAAGAGGGACGGATCATGCCCTTGCTGCTTTTTCCGGACATATGCAACTGGGTGATACGTATTCGATGGTGGGTCAGATCGAGCGGTCTATTGGATGCTATGAAGAGGGCTTGAAGATTCAGATCGAAGCCTTGGGTGAGACGGATCCCAGAGTTGGGGAGACTTGCAGGTATTTATCTGAGGCGCACGTTCAAGCAATGCAATTTGATAGAGCAGAAGAATTATGCAAGAAAACTCTTGAGATTCATCATGCACATAGTGAGCCTGCATCACTTGAAGAAGCAGCCGACCGCCGACTGATGGCGCTCATTTGTGAGGCGAAGGGCGATTACGAACAGGCGCTTGAGCATCTTGTCCTGGCCAGTATGGCGATGGTAGCAAATGGGCAAGACAGCGAGGTTGCTGCCATTGATGTGAGCATTGGAAATATTTACATGTCTCTAGCTCGCTTTGATGAGGCAGTCTTCTCATACCAAAAGGCTCTTACTGTGTTCAAAGCATCCAAGGGTGATAACCATCCTTTGGTCGCCTCGGTCTTCATACGCCTCGCTGACTTGTATCATCGGACTGGAAAGCTCCGGGAGTCGAGATCTTATTGCGAAAATGCAATGAGGATATACTCAAAGCCTGTGCCTGGAACTTCACCCGAAGAAATTGCTGGTGGGTTGACCGGAGTTTCAGCGATTTACGAGTCTGTTGGTGAGGCCGAGGAGGCGTTGAAGCTCTTGCAGAAGGCTATGAAGATGTTGGAAGATAACCCTGGACAGCATAGCACAATTGCCGGGATAGAAGCACGGATGGGAGTCATGTTTTACTTGGTTGGAAGGTACGAAGATGCAAGGATCGCGTTTGAGAGTGCGATATCGAAACTTCGAGCCACCGGGGAGAGGAAATCTGCGTTCTTTGGTGTCGTGTTGAATCAAATGGGATTGGCCTGTGTGCAGTTGTTCAAGATTGATGAAGCTGTTGAGCTGTTTGAAGAAGCAAGAGGCATTTTGGAGCAGGAGTGTGGCAATTGTCATCAAGATACCATTGGAGTTTATAGCAACCTTGCTGCAACCTATGATGCTATGGGAAGAGTCGATGATGCTATTGAAATATTGGAATCTGTTCTTAAGTTGAGAGAAGAGAAGCTCGGAATTGCGAATCCCGATTTTGAGGATGAAAAGCGGAGACTGGCTGAGCTACTGAAGGAAGCAGGCCGAACCCGAAACCGGAAAGCAAAGTCTCTGGAAAACCTCATTGACCCGAACTCGAGGAAGACGAAGAAGGAGGCAACAAAGAAGTGGTCGAGCTTGGGATTTAGAATCTGA 1773 50.82 MPGLVSVKTPPDTPPLRISVPDTPPVSNHRTPSPLTNKQPSPSSSRSTNGKKKLQPESPTATQCPPDSSLDNPDLGPFLLKLARDTIASGDGPNKALDYAIRASKSFERCAVDGEPSLDLTMSLHVLAAIYCSLGRFEEAVPVLEQAIQVPDIGRGTDHALAAFSGHMQLGDTYSMVGQIERSIGCYEEGLKIQIEALGETDPRVGETCRYLSEAHVQAMQFDRAEELCKKTLEIHHAHSEPASLEEAADRRLMALICEAKGDYEQALEHLVLASMAMVANGQDSEVAAIDVSIGNIYMSLARFDEAVFSYQKALTVFKASKGDNHPLVASVFIRLADLYHRTGKLRESRSYCENAMRIYSKPVPGTSPEEIAGGLTGVSAIYESVGEAEEALKLLQKAMKMLEDNPGQHSTIAGIEARMGVMFYLVGRYEDARIAFESAISKLRATGERKSAFFGVVLNQMGLACVQLFKIDEAVELFEEARGILEQECGNCHQDTIGVYSNLAATYDAMGRVDDAIEILESVLKLREEKLGIANPDFEDEKRRLAELLKEAGRTRNRKAKSLENLIDPNSRKTKKEATKKWSSLGFRI 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2682965 2687259 + CmaCh16G005260.1 Cma16g00526 311124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00526 590 Pfam Tetratricopeptide repeat 287 361 - -
Cma16g00526 590 Pfam Tetratricopeptide repeat 458 530 - -
Cma16g00526 590 PANTHER - 1 589 - -
Cma16g00526 590 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Cma16g00526 590 ProSiteProfiles TPR repeat profile. 498 531 IPR019734 GO:0005515
Cma16g00526 590 SUPERFAMILY TPR-like 125 534 IPR011990 GO:0005515
Cma16g00526 590 Coils Coil 386 406 - -
Cma16g00526 590 MobiDBLite consensus disorder prediction 561 590 - -
Cma16g00526 590 Gene3D Tetratricopeptide repeat domain 455 575 IPR011990 GO:0005515
Cma16g00526 590 Pfam MalT-like TPR region 125 278 IPR041617 -
Cma16g00526 590 Gene3D Tetratricopeptide repeat domain 275 454 IPR011990 GO:0005515
Cma16g00526 590 ProSiteProfiles TPR repeat profile. 288 321 IPR019734 GO:0005515
Cma16g00526 590 Gene3D Tetratricopeptide repeat domain 69 166 IPR011990 GO:0005515
Cma16g00526 590 MobiDBLite consensus disorder prediction 561 584 - -
Cma16g00526 590 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 1 589 - -
Cma16g00526 590 MobiDBLite consensus disorder prediction 24 69 - -
Cma16g00526 590 Gene3D Tetratricopeptide repeat domain 167 274 IPR011990 GO:0005515
Cma16g00526 590 MobiDBLite consensus disorder prediction 1 76 - -
Cma16g00526 590 Coils Coil 539 559 - -
Cma16g00526 590 SMART tpr_5 456 489 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 498 531 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 373 406 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 414 447 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 248 281 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 164 197 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 288 321 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 330 363 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 121 154 IPR019734 GO:0005515
Cma16g00526 590 SMART tpr_5 206 239 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00526 - - - csv:101207194 1095.49
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00604 Cma16g00526 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00126 Cma-Chr10:559786 Cma16g00526 Cma-Chr16:2682965 0 dispersed
Cma11g00097 Cma-Chr11:522626 Cma16g00526 Cma-Chr16:2682965 0 dispersed
Cma16g00526 Cma-Chr16:2682965 Cma17g01353 Cma-Chr17:9041544 1.34E-49 dispersed
Cma17g00513 Cma-Chr17:3473190 Cma16g00526 Cma-Chr16:2682965 4.04E-30 transposed
Cma16g00526 Cma-Chr16:2682965 Cma04g00580 Cma-Chr4:2948942 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g193 . Blo03g00263 . Bda08g00450 Bpe05g00710 . . . . Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla07g01078 Cam07g1422 Cec07g1234 Cco07g1213 Clacu07g1138 Cmu07g1121 Cre07g1498 . . . . . . . Cme07g01520 . . . . . . Bma05g00892 Bma12g00623 . . . . Cma16g00526 . . . . . . . . . . . . . . . . . . . Csa04g00686 Chy07g01123 .
Vvi2g880 . . . . . . Bma07g00966 Bma14g00111 Cmo06g00611 Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla10g00110 Cam10g0105 Cec10g0114 Cco10g0115 Clacu10g0111 Cmu10g0958 Cre10g0368 . . . . Lsi07g01139 . . Cme06g02415 Blo03g00840 . Bda07g00139 . Bpe08g01075 . . . . . . Cma06g00604 Cma16g00526 Car06g00539 Car16g01140 . . . . . . . . . . . . . . . . . Csa03g00109 Chy06g02196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001869 2 3 3 3 2 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 3 2 2 2 2 2 2 3 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00526 Cma_Chr16 FPKM 27.580587 32.365192 21.737635 19.42802 25.559811 25.036482 26.645895 4.974944 5.946189 4.942445