Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00533 | ATGGCTAATCGGGGAGGAGGGTCGTCTCAAGGTGGGGGAGGAGATGGACTGTACACCGAGCTTTGGAAGGCATCGGCTGGGCCTCTTGTGGAAGTTCCTCGAGTTAATGACAAGGTTTTCTACTTCCCTCAAGGCCACATGGAACAGTTGGAGGCATCTCCAAATCATGAACTGAATCAGAAACAACCCTTGTTTAAACTTTCCTCCAAAATTCTCTGCCGTGTTGTTGATGTTCGCCTGCTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATAACTTTAATGCCTGATTCAAATCAAGAGGAACCTACAAACCCTGATCCTTCGCCACCAGAGTGTCGAAAACCGAAAGTCCATTCATTTTGCAAGGTCTTGACTGCTTCTGATACTAGCACCCATGGAGGATTCTCCGTGCTTCGTAAACACGCCACGGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTTGTAGCCAAAGATCTTCATGGTTACGAGTGGCGATTCAAGCATATCTTTAGGGGTCAACCACGAAGGCATTTGCTAACGACGGGATGGAGCACGTTTGTTACTTCGAAAAGACTAGTTGCTGGTGATTCTTTTGTGTTCTTGAGAGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTGCTCGCCAACAAACCAGCATGCCTTCATCTGTGATTTCAAGTGACAGCATGCACTTAGGAGTGCTTGCTACTGCCTCTCACGCCGTGTCAACTCTAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCGAGCCAGTTTATCGTCAGCTTGAATAAGTACATCGAAGCAATGAACAGGAAGTTCTTAGTTGGGATGAGATTCAAGATGAGATTCGAGGGAGAGGAGTCTCCCGAGAGAAGGTTTTCGGGTACCATTGTCGGAGTTGACGACATATCTCCTCACTGGCCCAATTCGAAATGGCAATCGCTAAGAATTCAATGGGATGAACTTGCATCTATTCCTCGACCTGATAGAGTTTCGCCATGGGAGATTGAACCTTTTGTGGCGCCTACGTCCCCGAGCATTCCGCAATCGGTTTCGGTAAAGAATAAAAGGCTTCGGCCTCCACTTGACATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGACATCCAGGATCAACTCAATCACATGACGATAGGGCACAGCTTAGCATTGCTGCGTCTGAAATGAAACGATTTGAAAATCACGCAACGTGGAATTACAAGCAAACTGATGTTAGCAGCATTGGGAATTCTGTATCAAGGACCCCAAAGGAGGGCTCTTGGTTAGCTTCCCCAAATGGGAGTGTTTCGCAGCATCGATTACAGAATTTGACAGATGACCGAAACAGCAGTTATGTTTGGTCAACCGTCTTCTCGGGAGCGCCAGTAGCACAGTCGACATGTCGAGCTCCACACCCATCTAATCCAAAGAGCAGCGACCAAGTTAACGATCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGATATCATCGGTCATTCTAAGAGCCCAGTTCCACCCGAAATGGCTGCTGATCAACCGATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAGACCAGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAGCAGCTCGACCAACAGCCGAAGTCGTACCAAGGTTCAAATGCAGGGGATGGCTGTCGGACGTGCTGTGGACCTTACGATGTTGGAAGGGTATGGCCAACTCATTGACGAACTGGAAAAGATGTTCGATATCAAGGGAGAACTTCACCCACGTGATAAGTGGGAGATTGTCTTCACAGACGACGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCGAGTCAGGATGTGAAGATGATGAATTCGGTTAGCAAACTCACAATGTCTGCAATGGAATGCGATGGAACGGTAATAACCTCGGAGTCGGCCGACAGCTGA | 2079 | 47.57 | MANRGGGSSQGGGGDGLYTELWKASAGPLVEVPRVNDKVFYFPQGHMEQLEASPNHELNQKQPLFKLSSKILCRVVDVRLLAEQETDEVYAQITLMPDSNQEEPTNPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQTSMPSSVISSDSMHLGVLATASHAVSTLTRFVVYYKPRASQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWQSLRIQWDELASIPRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRLRPPLDIPDSDNSTVTTLRHPGSTQSHDDRAQLSIAASEMKRFENHATWNYKQTDVSSIGNSVSRTPKEGSWLASPNGSVSQHRLQNLTDDRNSSYVWSTVFSGAPVAQSTCRAPHPSNPKSSDQVNDLGEKGRKTEVAPSCRLFGIDIIGHSKSPVPPEMAADQPISAPNEITDAEQNSDQPKASKERKLGLLQVPPKEIQHKQSSSTNSRSRTKVQMQGMAVGRAVDLTMLEGYGQLIDELEKMFDIKGELHPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMMNSVSKLTMSAMECDGTVITSESADS | 692 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 2722122 | 2726386 | - | CmaCh16G005330.1 | Cma16g00533 | 311131 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00533 | 692 | Gene3D | - | 575 | 668 | - | - | |
Cma16g00533 | 692 | PANTHER | AUXIN RESPONSE FACTOR 9 | 12 | 679 | - | - | |
Cma16g00533 | 692 | Gene3D | - | 283 | 354 | - | - | |
Cma16g00533 | 692 | SUPERFAMILY | CAD & PB1 domains | 575 | 656 | - | - | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 377 | 397 | - | - | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 477 | 505 | - | - | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 561 | 585 | - | - | |
Cma16g00533 | 692 | ProSiteProfiles | B3 DNA-binding domain profile. | 122 | 224 | IPR003340 | GO:0003677 | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 356 | 397 | - | - | |
Cma16g00533 | 692 | ProSiteProfiles | PB1 domain profile. | 580 | 661 | IPR000270 | GO:0005515 | |
Cma16g00533 | 692 | Pfam | Auxin response factor | 248 | 326 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 426 | 448 | - | - | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 477 | 494 | - | - | |
Cma16g00533 | 692 | Pfam | B3 DNA binding domain | 122 | 222 | IPR003340 | GO:0003677 | |
Cma16g00533 | 692 | Gene3D | - | 119 | 223 | IPR015300 | - | |
Cma16g00533 | 692 | SUPERFAMILY | DNA-binding pseudobarrel domain | 113 | 251 | IPR015300 | - | |
Cma16g00533 | 692 | SMART | B3_2 | 122 | 224 | IPR003340 | GO:0003677 | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 96 | 116 | - | - | |
Cma16g00533 | 692 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 12 | 679 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cma16g00533 | 692 | MobiDBLite | consensus disorder prediction | 568 | 585 | - | - | |
Cma16g00533 | 692 | Pfam | AUX/IAA family | 558 | 616 | IPR033389 | - | |
Cma16g00533 | 692 | Pfam | AUX/IAA family | 627 | 664 | IPR033389 | - | |
Cma16g00533 | 692 | CDD | B3_DNA | 120 | 222 | IPR003340 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g00922 | Cma16g00533 | CCT | |
Cma02g00922 | Cma16g00533 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g01291 | Cma-Chr15:8184046 | Cma16g00533 | Cma-Chr16:2722122 | 0 | dispersed | |
Cma04g02760 | Cma-Chr4:18556833 | Cma16g00533 | Cma-Chr16:2722122 | 4.29E-25 | transposed | |
Cma10g00017 | Cma-Chr10:64046 | Cma16g00533 | Cma-Chr16:2722122 | 1.66E-25 | transposed | |
Cma08g00114 | Cma-Chr8:601684 | Cma16g00533 | Cma-Chr16:2722122 | 0 | transposed | |
Cma16g00533 | Cma-Chr16:2722122 | Cma04g00675 | Cma-Chr4:3436434 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36541 | PF02362 | B3 | 6.80E-22 | CL0405 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00533 | K14486 | - | csv:101213942 | 1150.58 |