Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00533 ATGGCTAATCGGGGAGGAGGGTCGTCTCAAGGTGGGGGAGGAGATGGACTGTACACCGAGCTTTGGAAGGCATCGGCTGGGCCTCTTGTGGAAGTTCCTCGAGTTAATGACAAGGTTTTCTACTTCCCTCAAGGCCACATGGAACAGTTGGAGGCATCTCCAAATCATGAACTGAATCAGAAACAACCCTTGTTTAAACTTTCCTCCAAAATTCTCTGCCGTGTTGTTGATGTTCGCCTGCTGGCTGAGCAGGAAACAGATGAGGTTTATGCACAGATAACTTTAATGCCTGATTCAAATCAAGAGGAACCTACAAACCCTGATCCTTCGCCACCAGAGTGTCGAAAACCGAAAGTCCATTCATTTTGCAAGGTCTTGACTGCTTCTGATACTAGCACCCATGGAGGATTCTCCGTGCTTCGTAAACACGCCACGGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCAACTCAAGAACTTGTAGCCAAAGATCTTCATGGTTACGAGTGGCGATTCAAGCATATCTTTAGGGGTCAACCACGAAGGCATTTGCTAACGACGGGATGGAGCACGTTTGTTACTTCGAAAAGACTAGTTGCTGGTGATTCTTTTGTGTTCTTGAGAGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTGCTCGCCAACAAACCAGCATGCCTTCATCTGTGATTTCAAGTGACAGCATGCACTTAGGAGTGCTTGCTACTGCCTCTCACGCCGTGTCAACTCTAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCGAGCCAGTTTATCGTCAGCTTGAATAAGTACATCGAAGCAATGAACAGGAAGTTCTTAGTTGGGATGAGATTCAAGATGAGATTCGAGGGAGAGGAGTCTCCCGAGAGAAGGTTTTCGGGTACCATTGTCGGAGTTGACGACATATCTCCTCACTGGCCCAATTCGAAATGGCAATCGCTAAGAATTCAATGGGATGAACTTGCATCTATTCCTCGACCTGATAGAGTTTCGCCATGGGAGATTGAACCTTTTGTGGCGCCTACGTCCCCGAGCATTCCGCAATCGGTTTCGGTAAAGAATAAAAGGCTTCGGCCTCCACTTGACATTCCAGATTCTGATAATTCAACCGTAACAACTCTACGACATCCAGGATCAACTCAATCACATGACGATAGGGCACAGCTTAGCATTGCTGCGTCTGAAATGAAACGATTTGAAAATCACGCAACGTGGAATTACAAGCAAACTGATGTTAGCAGCATTGGGAATTCTGTATCAAGGACCCCAAAGGAGGGCTCTTGGTTAGCTTCCCCAAATGGGAGTGTTTCGCAGCATCGATTACAGAATTTGACAGATGACCGAAACAGCAGTTATGTTTGGTCAACCGTCTTCTCGGGAGCGCCAGTAGCACAGTCGACATGTCGAGCTCCACACCCATCTAATCCAAAGAGCAGCGACCAAGTTAACGATCTTGGGGAAAAGGGGAGGAAAACTGAGGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGATATCATCGGTCATTCTAAGAGCCCAGTTCCACCCGAAATGGCTGCTGATCAACCGATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAGACCAGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAGCAGCTCGACCAACAGCCGAAGTCGTACCAAGGTTCAAATGCAGGGGATGGCTGTCGGACGTGCTGTGGACCTTACGATGTTGGAAGGGTATGGCCAACTCATTGACGAACTGGAAAAGATGTTCGATATCAAGGGAGAACTTCACCCACGTGATAAGTGGGAGATTGTCTTCACAGACGACGAAGGAGATACAATGCTCATGGGCGATTACCCGTGGCAGGAATTCTGTAACATGGTGAGAAGAATATATATATGGTCGAGTCAGGATGTGAAGATGATGAATTCGGTTAGCAAACTCACAATGTCTGCAATGGAATGCGATGGAACGGTAATAACCTCGGAGTCGGCCGACAGCTGA 2079 47.57 MANRGGGSSQGGGGDGLYTELWKASAGPLVEVPRVNDKVFYFPQGHMEQLEASPNHELNQKQPLFKLSSKILCRVVDVRLLAEQETDEVYAQITLMPDSNQEEPTNPDPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQTSMPSSVISSDSMHLGVLATASHAVSTLTRFVVYYKPRASQFIVSLNKYIEAMNRKFLVGMRFKMRFEGEESPERRFSGTIVGVDDISPHWPNSKWQSLRIQWDELASIPRPDRVSPWEIEPFVAPTSPSIPQSVSVKNKRLRPPLDIPDSDNSTVTTLRHPGSTQSHDDRAQLSIAASEMKRFENHATWNYKQTDVSSIGNSVSRTPKEGSWLASPNGSVSQHRLQNLTDDRNSSYVWSTVFSGAPVAQSTCRAPHPSNPKSSDQVNDLGEKGRKTEVAPSCRLFGIDIIGHSKSPVPPEMAADQPISAPNEITDAEQNSDQPKASKERKLGLLQVPPKEIQHKQSSSTNSRSRTKVQMQGMAVGRAVDLTMLEGYGQLIDELEKMFDIKGELHPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMMNSVSKLTMSAMECDGTVITSESADS 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2722122 2726386 - CmaCh16G005330.1 Cma16g00533 311131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00533 692 Gene3D - 575 668 - -
Cma16g00533 692 PANTHER AUXIN RESPONSE FACTOR 9 12 679 - -
Cma16g00533 692 Gene3D - 283 354 - -
Cma16g00533 692 SUPERFAMILY CAD & PB1 domains 575 656 - -
Cma16g00533 692 MobiDBLite consensus disorder prediction 377 397 - -
Cma16g00533 692 MobiDBLite consensus disorder prediction 477 505 - -
Cma16g00533 692 MobiDBLite consensus disorder prediction 561 585 - -
Cma16g00533 692 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cma16g00533 692 MobiDBLite consensus disorder prediction 356 397 - -
Cma16g00533 692 ProSiteProfiles PB1 domain profile. 580 661 IPR000270 GO:0005515
Cma16g00533 692 Pfam Auxin response factor 248 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma16g00533 692 MobiDBLite consensus disorder prediction 426 448 - -
Cma16g00533 692 MobiDBLite consensus disorder prediction 477 494 - -
Cma16g00533 692 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Cma16g00533 692 Gene3D - 119 223 IPR015300 -
Cma16g00533 692 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Cma16g00533 692 SMART B3_2 122 224 IPR003340 GO:0003677
Cma16g00533 692 MobiDBLite consensus disorder prediction 96 116 - -
Cma16g00533 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma16g00533 692 MobiDBLite consensus disorder prediction 568 585 - -
Cma16g00533 692 Pfam AUX/IAA family 558 616 IPR033389 -
Cma16g00533 692 Pfam AUX/IAA family 627 664 IPR033389 -
Cma16g00533 692 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00922 Cma16g00533 CCT
Cma02g00922 Cma16g00533 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g01291 Cma-Chr15:8184046 Cma16g00533 Cma-Chr16:2722122 0 dispersed
Cma04g02760 Cma-Chr4:18556833 Cma16g00533 Cma-Chr16:2722122 4.29E-25 transposed
Cma10g00017 Cma-Chr10:64046 Cma16g00533 Cma-Chr16:2722122 1.66E-25 transposed
Cma08g00114 Cma-Chr8:601684 Cma16g00533 Cma-Chr16:2722122 0 transposed
Cma16g00533 Cma-Chr16:2722122 Cma04g00675 Cma-Chr4:3436434 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36541 PF02362 B3 6.80E-22 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00533 K14486 - csv:101213942 1150.58