Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00534 ATGCCTTTTTCTTCCTTTGAATTCGCCCTTTTTTCATCTTCTACACGCAATCTCCTCTTCCTTTACCTAATACCCATCTCTTTTGTTTGGTGGGTTTGTTCAGAAATGGAGAGTAACCCGCAATCGCTTAGGCAATTCAGCGACCAGCTTCGACTGCAATCTGGGAATCTTACGAACCTGTCGCTCAACGATTCTATCTGGAGCAATTCGTATGTCTCCAAGAGGCACGAAGAGAGGAGGAATTTCGATGTGCGAAATGGCGGAGAGGTAAATTTAGTGAATAATTTTAAGCCCAAACTGTGTGATTCTGATGTCAATCGGTTCAATGATGGATGGAATAGTTTTAAGCCGAGAGTTGCTTCTGATCTTAATAATTGGAATAACAGTAGCAATCTTAGTTCAACTGGGTATGAAAAGAATGCACTCAATGTGTTTGATAATGGGTGGAATAGTTTGAAGCCACAGGGGTCTGATTTTAATGGCTTCAACGATGGTTGGAAGCTTAATTCTGCAAATATGGGGGTTGATCCAGTGGTTGGAGGAACCCAAAAGGGTATTAACGGAGGGTTTAACCAAGGGATTTTCTCACAAATTGGGAATTTTAACAGTAATGGTTTTGTAAATGTGAAGAACTACAAGAACAGTGGGAAGGTTGAAGAAGAAAATGGAGGAAAGAATGGGAAGAAGAACAGTAACAAGAAGATTAATGGTGAAAATAGCAATGATAATAAGGAAAGTAATAAGAATGGTTTGGACAAGAGGTTCAAAACCCTTCCCCCATCTGAGTCTTTGCCCAGAAATGAAACAATTGGTGGATATATCTTTGTCTGCAACAATGATACAATGCAAGAGAATCTGAAGAGGCAGCTTTTTGGTTTGCCTCCAAGATACAGAGATTCTGTCAGGGCCATAACTCCTGGGCTGCCTATTTTCCTCTACAACTATTCTACCCACCAACTCCATGGAATCTTTGAGGCTGCAAGCTTTGGAGGGGCAAACATTGATCCAACTGCCTGGGAAGACAAGAAAACTCCGGGCGAATCTCGTTTCCCGGCGCAGGTCAGAACTGTGACTAGGAAGATATGTGAGCCACTGGAAGAGGACTCTTTCAGACCGATTCTTCACCATTACGACGGTCCCAAGTTTCGTCTCGAACTCAACATTCCAGAGGCACTCTCTCTGCTGGATATATTTGAAGAACAATCCTGTTGA 1212 42.33 MPFSSFEFALFSSSTRNLLFLYLIPISFVWWVCSEMESNPQSLRQFSDQLRLQSGNLTNLSLNDSIWSNSYVSKRHEERRNFDVRNGGEVNLVNNFKPKLCDSDVNRFNDGWNSFKPRVASDLNNWNNSSNLSSTGYEKNALNVFDNGWNSLKPQGSDFNGFNDGWKLNSANMGVDPVVGGTQKGINGGFNQGIFSQIGNFNSNGFVNVKNYKNSGKVEEENGGKNGKKNSNKKINGENSNDNKESNKNGLDKRFKTLPPSESLPRNETIGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPIFLYNYSTHQLHGIFEAASFGGANIDPTAWEDKKTPGESRFPAQVRTVTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEALSLLDIFEEQSC 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2735278 2737648 + CmaCh16G005340.1 Cma16g00534 311132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00534 403 Pfam Development and cell death domain 271 398 IPR013989 -
Cma16g00534 403 SMART dcd 268 400 IPR013989 -
Cma16g00534 403 MobiDBLite consensus disorder prediction 238 252 - -
Cma16g00534 403 PANTHER DCD (DEVELOPMENT AND CELL DEATH) DOMAIN PROTEIN 42 402 - -
Cma16g00534 403 MobiDBLite consensus disorder prediction 216 264 - -
Cma16g00534 403 MobiDBLite consensus disorder prediction 216 232 - -
Cma16g00534 403 ProSiteProfiles DCD domain profile. 268 400 IPR013989 -
Cma16g00534 403 PANTHER - 42 402 IPR044832 GO:0034976
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00534 - - - csv:101208173 640.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01506 Cma-Chr11:9869272 Cma16g00534 Cma-Chr16:2735278 4.00E-85 dispersed
Cma14g00715 Cma-Chr14:3610797 Cma16g00534 Cma-Chr16:2735278 1.10E-92 dispersed
Cma15g01292 Cma-Chr15:8196065 Cma16g00534 Cma-Chr16:2735278 2.68E-13 wgd
Cma16g00534 Cma-Chr16:2735278 Cma04g00676 Cma-Chr4:3450944 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g160 . . . . . . Bma07g01687 . . Cmo16g00586 . . . . . Cpe14g00450 . . . . . . . . Cla07g01087 Cam07g1411 Cec07g1250 Cco07g1227 Clacu07g1152 Cmu07g1131 Cre07g1511 . . . . . . . Cme07g01537 . Blo19g00370 . Bda09g00012 Bpe08g01522 . . . . . . . Cma16g00534 . . . . . . . . . . . . . . . . . . . Csa04g00676 Chy07g01134 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007398 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00534 Cma_Chr16 FPKM 75.122406 81.533195 97.610176 100.141396 29.450045 25.618156 30.388964 121.861237 120.862007 123.055626