Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00536 ATGGATTCCAAAATCCAACGTAGAATCGAGGAAGCCGTCCGCAGAATTCTCGAATCCTCCGACATGGACGAAATGACCGAGTCCAAAATTCGAGCCCTTGCCTCTAAGGACCTCGACCTCGACCTCTCCAAATCCCCTTACAAGGCTCTGGTTCGCAAGGTTGTGGAATCCTTCCTCCAAAAACGGTCTGAAGATCAGCTGCAAGAGGAGGCCGAGGATGCCTCTGCAGATCAGCTGCAAGAGGAGGCCGAGGATGCCTCTGCAGATCAGCTGCAAGAGGAGGCCGAGGATGCCTCTGCTGCTAAGGAAAAGGAGTACGACGACGATGGCGATCTCATTGTTTGTTGGTTATCCAGCAAGAGGAAGGTGACGATTCAGGATTTTAGAGGGAAGACTCTGGTTTCGATCAGGGAGTTTTATAGAAAGGATGGGAAAGACCTCCCTACAGCAAAAGGAATAAGCTTGACTGAGGAACAGTGGTCCGTCTTTAAGAACAATGTACCTGCCATAGAAAAAGCTATTAAGAATATGCAATCACAAATAATGTGA 549 48.63 MDSKIQRRIEEAVRRILESSDMDEMTESKIRALASKDLDLDLSKSPYKALVRKVVESFLQKRSEDQLQEEAEDASADQLQEEAEDASADQLQEEAEDASAAKEKEYDDDGDLIVCWLSSKRKVTIQDFRGKTLVSIREFYRKDGKDLPTAKGISLTEEQWSVFKNNVPAIEKAIKNMQSQIM 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2743423 2745863 - CmaCh16G005360.1 Cma16g00536 311134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00536 182 Coils Coil 64 108 - -
Cma16g00536 182 PIRSF RNA_polymII_KELP 1 181 IPR017415 -
Cma16g00536 182 MobiDBLite consensus disorder prediction 70 92 - -
Cma16g00536 182 Gene3D Transcriptional Coactivator Pc4; Chain A 103 182 IPR009044 GO:0003677|GO:0006355
Cma16g00536 182 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 4 180 IPR045125 GO:0003713|GO:0060261
Cma16g00536 182 SUPERFAMILY ssDNA-binding transcriptional regulator domain 114 176 IPR009044 GO:0003677|GO:0006355
Cma16g00536 182 MobiDBLite consensus disorder prediction 64 105 - -
Cma16g00536 182 Pfam DEK C terminal domain 8 59 IPR014876 -
Cma16g00536 182 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP 4 180 - -
Cma16g00536 182 Pfam Transcriptional Coactivator p15 (PC4) 117 165 IPR003173 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00536 K25815 SUB1; activated RNA polymerase II transcriptional coactivator p15 - csv:101208418 261.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01014 Cma16g00536 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01014 Cma-Chr6:6854389 Cma16g00536 Cma-Chr16:2743423 2.05E-44 dispersed
Cma07g01275 Cma-Chr7:7120680 Cma16g00536 Cma-Chr16:2743423 3.96E-17 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g158 . . Bda06g00157 . . Bpe07g00061 . . Cmo06g01034 Cmo16g00589 . . . . . Cpe14g00452 . . . . . . . . Cla07g01089 Cam07g1409 Cec07g1252 Cco07g1229 Clacu07g1154 Cmu07g1133 Cre07g1513 . . . Cone9ag0866 . . . . . . . . . . . Bma12g00616 . . . Cma06g01014 Cma16g00536 Car06g00852 . . . . . . . . . . . . . . . . . . Csa04g00674 Chy07g01136 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011192 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36542 PF08766 DEK_C 8.50E-12 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00536 Cma_Chr16 FPKM 34.78381 39.422249 24.764294 23.164457 23.858133 21.150742 23.145084 32.424603 32.54224 36.692249