Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00538 ATGGAGATTGCCTCTGCTGCCACCATTGCCTTGTTGTCCCAACCTTTTCCTATAGCTGCGATTGTTACTTTTCTTTGTTTTCTTCTCGCTCTTTTCGCTGCCGTTCGATTGGTTTCTGTTCCTTACATTAGAAGGACGACAACGGTACAATTGGAGGGCGTGGGTACGAGGAATTTTAATTGTACCTGTTCGCTTAACGGTGGTGTGGCTATTGGGGGTTTGAACCCCAGGGCTGAGATTACTTCTTCGACTAGTACGAGTATGCCTTATTTGAACGGTCATGCAGTGGAAGTGCTGGAGAAGGCGCCGGTTGTTGTGACGGAGCGGCAGACGGGCGCTTCGATGATGGAGCAGTTGGTCCCGGAGATTACTACGCACGCTCTTAGTTACTTGGATTATCCCAGTCTGTGTCGTTTGTCCATGACTAATTCCTTGATGCGGAAAGCCGCGAATGATGATAGTGCCTGGAAGGCGCTTTATCATAAGGACTTCACACTGGAACAGGATACTGTAACTCCAATTAACGGGTGGAAGGCATATTATGCTGCAACAAGAACAATTATGAATATCAATGCCCAATTCTATAACATCATCAGAGACAGGTCTCTTCAAGCGATGAGTCATTTTTGGTTAAATGCAGATTATGTGAAGTGTATTCATGCCTCAGGAGAATTCTTTTCCGGGTATAATGCCGTAATTCAAAGTTGGCAGGTTGCATTCAATTGGGAACAAGGGATTAATTTTCAGGTCCGTGATGTACGGGCTCGTGTGCTTACAGACATGGCTTGGGTTAGCATGAAAACCTACGTTGACATGGATACAGGGCCATTCAATGTGACTAACATCTATGAGTTCCATAATGGTAGATGGTACATGGTGCATCATCACAGCTCCGTGATGCTCATTGTTGGGGAGATGGAACAACAAATGGTTCATGGGTAA 942 45.54 MEIASAATIALLSQPFPIAAIVTFLCFLLALFAAVRLVSVPYIRRTTTVQLEGVGTRNFNCTCSLNGGVAIGGLNPRAEITSSTSTSMPYLNGHAVEVLEKAPVVVTERQTGASMMEQLVPEITTHALSYLDYPSLCRLSMTNSLMRKAANDDSAWKALYHKDFTLEQDTVTPINGWKAYYAATRTIMNINAQFYNIIRDRSLQAMSHFWLNADYVKCIHASGEFFSGYNAVIQSWQVAFNWEQGINFQVRDVRARVLTDMAWVSMKTYVDMDTGPFNVTNIYEFHNGRWYMVHHHSSVMLIVGEMEQQMVHG 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2748333 2750955 - CmaCh16G005380.1 Cma16g00538 311136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00538 313 SUPERFAMILY NTF2-like 182 300 IPR032710 -
Cma16g00538 313 ProSiteProfiles F-box domain profile. 113 159 IPR001810 GO:0005515
Cma16g00538 313 PANTHER F-BOX PROTEIN SKIP8 11 313 IPR044260 -
Cma16g00538 313 Gene3D - 178 309 - -
Cma16g00538 313 SUPERFAMILY F-box domain 112 186 IPR036047 GO:0005515
Cma16g00538 313 Gene3D - 104 157 - -
Cma16g00538 313 Pfam SnoaL-like domain 187 300 IPR037401 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00538 - - - csv:101214184 587.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00262 Cma-Chr6:1305758 Cma16g00538 Cma-Chr16:2748333 7.77E-14 transposed
Cma16g00538 Cma-Chr16:2748333 Cma04g00678 Cma-Chr4:3456198 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g156 . Blo03g00257 Bda06g00156 . . Bpe07g00062 . . . Cmo16g00590 . . . . . Cpe14g00453 . . . . . . . . Cla07g01091 Cam07g1407 Cec07g1254 Cco07g1231 Clacu07g1156 Cmu07g1135 Cre07g1515 . . Cone6ag0862 Cone9ag0864 Lsi07g01122 . . Cme07g01541 . . . . . . . Bma12g00615 . . . . Cma16g00538 . . . . . . . . . . . . . . . . . . . Csa04g00672 Chy07g01138 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007131 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00538 Cma_Chr16 FPKM 3.530483 3.9971 4.635411 4.904241 3.951431 4.567026 3.529097 5.0865 3.688887 5.655762