Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00541 ATGACCCGCCCACATGTAGCCATTGCCCAGCTTCGTCATCGTCTAACGACCTCTCATTCCTCATCCTTTATCCGCCAAAATCCCCACTCTAGAGAGAGAAAAAAAGCACAGAGGAGAGAGAAAGCATTCGACAAATTCTATGCCATTTTCCCTCGTTTCAATCCAAAGCTCCACTGTACAATGATTCTGCACTTGAGTTCACCATGGCTCACTATCACTCGCCTCCCTCATCCCAAACTCATCGAACCACTCGCCTCTGCAAGCAATGGCACTAGCGTCCTCATGCCTCTCCTTCTATGCTCCCACGCTTTCTTTCGTTTCACGTCCTTCTCCCAGTCGACGCGAGTTAGAGCTTCTTTAAATGTCAGCAACATCGATGGCGCCGCGGCTTTTGAGAATCCTGTTTCGGATTTACTCGACGACGAGCTGATTTGTGTTGTTTCGGGTGCTAAGGATGCCGATGAAGTGCTGCGGATGATCGCCGAAAAGTCAGGGAGGAATGGAGGTACTGTGTCTGTTCCGGACTGTCGTTTGATTATTGCGGCTGCACTTAAGCGTAACAATTCGGAGCTTGCTCTGTCCGTGTTCTACGCAATGCGCTCCAGTTTCTATGAAGTTACAGCATGGGAGGGTGTTAATGACAATGTTTCCTCTGTTGAGAGATGGAAATGGGCTAGGCCAGATGTCCATGTATATACATTGCTGATTCAAGGTCTTGCAGCATCCTTGAGGGTCTCTGATGCTCTTAGGATTATCGAGATTATTTGCCGAGTTGGTGTATCACCTGCTGAGGAGGTCCCATTTGGAAAGGTAGTGCAGTGCCCCAGTTGTATGGTAGCAGTAGCGGTTGCACAACCCCAGCACGGTATTCAGATTGTATCCTGTGCAAAGTGCCGCTACCAATATGAACTTATTTCAGGAAACATAGTTAATATTGAGTCAGAAGAAATTAGCATGGATACTCCAGCATGGGAAAAAGCACTCCGGTTCTTGAATGTAATGAAGCAAAAACTCCCTGCTGCTGTGCACTCCATTGTGGTACAAACTCCTTCTGGAGTAGCACGAACCCAGAAGTTTGCCACTGAAACAGCAGATCTCCCAGCACGAGAAGGAGAAAGGGTGACAATTGCTGCTGCAGCTCCATCAAATGTATACAGAGAAGTTGGTCCAATTAAATTTAGTCCAAAGGATCCAAATTTGTACTCTGGTGAGCCTATGTGCTTGACAAATCATTCAGATGGCCGGGAATCACTATTGATAAGAGTGCCAGCAAAGGAAACCTCATTCTTACTTAAGCCGTCAGCCCTCTTTCCACTCATACTTTTATCTGTCGCTGGAGATGCTGCCTCTGGAGTTCTTGACCCCAGCTTGCCTCGGATGCTTTTAGTTGCTGGATTTGCTTCTCTAGCTGCAGGAGCTACTTTGAATTCATTTATTTTGCCTCAATTCAATCGGCTTCCTCAACGATCAGTTGATATCATTGCTATCAAACAGCAGCTTTTATCTCAATATAATGTGCTTCAGTCTCGTATCAGGGATTTAAAACTAGCTGCTGAAAAGGAGGTATGGATGTTGGCTCGGATGTGCCAATTAGAGAATAAAATTTTTGCCGTTGGAGAACCTTCTTACCGTGCACGTAGAAGTAGGATAAAAAAGGTGCGAGAAGGCTTGGAAAATTCCCTTAAGCAACGGATTGAACTAATAGAAAGCTATGCAAGGATTTCCTCAATGATTGAGATAGAAGTTGAAATGGAGTCTGATGTTATAGCTGCTGAAGCAGCCAGCAGTGTAGAAAGGGTTTCTGAACAGATTGAGCAAATCATGGTGCTGGAAAATCTAGAAGAGAGATGGAGATTACAAGCAGAAGCCAACGATGAAGCCGAAAGACTTTTCAACCAATCAATGCCAACAGAAGAGACTAGCAATTTGTCAAACCAATCTAGGAGTATGGACACCTCCATCACGAGTCCAGATACTTCCCAAACCTTCTTGCTTGTGAAAATGTCAATCAATCTCTACTTGGTGCATGTACATGAAGTTTTGAAGCAGCATCAGGTCAGTGCTTCGTGGCCAGATGTCTCATTACTGAACATCTCATTTGTTAAATTTTTAGGCTCTACTTCTATAAATTTGTTCTCCATTTCCGAATCTTTCTTCTTCAGCGGTTTCAATTCTCTGCCCCTTTTGATCAACTCTTCTTCTTCATTCTCTTGTGTGGTTATGGCGAAATCTATTCTTGTCACCGGTGGTGCTGGCTATATTGGAAGCCACACTGTTCTTCAGCTCCTCCTCGGCGGTTACCGGACTGTCGTCGTCGATAATTTGGATAATTCCTCTGAAATTTCTGTTCGTCGTGTCAAGGAGCTCGCCGGCGATCTCGGCAAAAATCTTTTGTTCCATAAGGTGGACCTCAGGGATAAACAGGCTTTGGAGAAGGTGTTTGCCTCAACACCATTTGACACTGTTATTCACTTTGCTGGGCTGAAAGCAGTTGGAGAAAGTGTACAGAAACCATTGCTTTACTATGACAACAACTTGATTGGAACAATTACTTTATTGGAAGTCATGGCGGCCCATGGTTGTAAAAAGCTCGTCTTCTCGTCTTCAGCCACCGTCTATGGTTGGCCAAAGGAGGTGCCATGTACAGAAGAATTCCCCCTCTCTGCAGCAAACCCATATGGACGAACCAAGCTTTTCATAGAAGAAATCTGTCGTGACACGTACCGATCGGACTCGGAATGGAAAATCATATTGCTAAGATATTTCAATCCGGTTGGTGCACATCACAGTGGCTATATTGGTGAGGATCCTCGTGGAATCCCGAACAACCTTATGCCTTTCGTGCAGCAAGTTGCTGTTGGCAGGCGTCCTGCCTTGACCGTCTTTGGAACCGACTATGCAACGAAAGATGGAACTGGAGTACGTGATTATATTCATGTTGTTGATTTAGCTGATGGACACATTGCTGCATTGCGCAAGTTGGATGCGGCTGGTATAGGTTGTGAAGTTTACAATCTGGGAACTGGAAAGGGTACATCAGTTTTGGAGATGGTTGCAGCTTTTGAAAAGGCATCTGGAAAGAAAATTCCTCTTGTAATGTCTGCACGCCGACCCGGTGACGCTGAAATCGTCTACGCGTCTACACACAAAGCAGAAAAGGAGCTGAACTGGAAATGTGCAGGGATCAGTGGAACTGGGCCAGCAAGAATCCTTATGGCTATGAACCTCCCAGCTCCAAGTGATGGGTATTGCTTATATATCTCTCTTGGGGCCATCTCTCAACCCTACACGCTTTTGCTTCTCCTCATAGATATCTTCTGTTATATTAGATATGAACTTCTTGGTTACGTTCCAAACGAGCAAATGCTTTCCACGGCCGCTCTATCTTTTCCTCTTTCCATTTCCAGTTTCTTCAAACCCGATTCTCTCTCTTTCTCTGAGCCGGAGATCTCGGATTTTGAAGTTGTTTCAAGCGTCGTCGTCGCCTTGATTAGTTGTCGGATCGAGGCGATCTGA 3516 45.31 MTRPHVAIAQLRHRLTTSHSSSFIRQNPHSRERKKAQRREKAFDKFYAIFPRFNPKLHCTMILHLSSPWLTITRLPHPKLIEPLASASNGTSVLMPLLLCSHAFFRFTSFSQSTRVRASLNVSNIDGAAAFENPVSDLLDDELICVVSGAKDADEVLRMIAEKSGRNGGTVSVPDCRLIIAAALKRNNSELALSVFYAMRSSFYEVTAWEGVNDNVSSVERWKWARPDVHVYTLLIQGLAASLRVSDALRIIEIICRVGVSPAEEVPFGKVVQCPSCMVAVAVAQPQHGIQIVSCAKCRYQYELISGNIVNIESEEISMDTPAWEKALRFLNVMKQKLPAAVHSIVVQTPSGVARTQKFATETADLPAREGERVTIAAAAPSNVYREVGPIKFSPKDPNLYSGEPMCLTNHSDGRESLLIRVPAKETSFLLKPSALFPLILLSVAGDAASGVLDPSLPRMLLVAGFASLAAGATLNSFILPQFNRLPQRSVDIIAIKQQLLSQYNVLQSRIRDLKLAAEKEVWMLARMCQLENKIFAVGEPSYRARRSRIKKVREGLENSLKQRIELIESYARISSMIEIEVEMESDVIAAEAASSVERVSEQIEQIMVLENLEERWRLQAEANDEAERLFNQSMPTEETSNLSNQSRSMDTSITSPDTSQTFLLVKMSINLYLVHVHEVLKQHQVSASWPDVSLLNISFVKFLGSTSINLFSISESFFFSGFNSLPLLINSSSSFSCVVMAKSILVTGGAGYIGSHTVLQLLLGGYRTVVVDNLDNSSEISVRRVKELAGDLGKNLLFHKVDLRDKQALEKVFASTPFDTVIHFAGLKAVGESVQKPLLYYDNNLIGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAANPYGRTKLFIEEICRDTYRSDSEWKIILLRYFNPVGAHHSGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGTDYATKDGTGVRDYIHVVDLADGHIAALRKLDAAGIGCEVYNLGTGKGTSVLEMVAAFEKASGKKIPLVMSARRPGDAEIVYASTHKAEKELNWKCAGISGTGPARILMAMNLPAPSDGYCLYISLGAISQPYTLLLLLIDIFCYIRYELLGYVPNEQMLSTAALSFPLSISSFFKPDSLSFSEPEISDFEVVSSVVVALISCRIEAI 1171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2769550 2783030 - CmaCh16G005410.1 Cma16g00541 311139

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00541 1171 Coils Coil 610 630 - -
Cma16g00541 1171 Gene3D - 745 1014 - -
Cma16g00541 1171 Pfam GDP-mannose 4,6 dehydratase 746 1058 IPR016040 -
Cma16g00541 1171 Gene3D - 933 1059 - -
Cma16g00541 1171 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 741 1059 IPR036291 -
Cma16g00541 1171 CDD UDP_G4E_1_SDR_e 745 1058 IPR005886 GO:0003978|GO:0006012
Cma16g00541 1171 TIGRFAM galE: UDP-glucose 4-epimerase GalE 745 1059 IPR005886 GO:0003978|GO:0006012
Cma16g00541 1171 Gene3D Tetratricopeptide repeat domain 138 345 IPR011990 GO:0005515
Cma16g00541 1171 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Cma16g00541 1171 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 61 638 - -
Cma16g00541 1171 Coils Coil 497 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00541 - - - cpep:111809863 1139.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01736 Cma-Chr1:11742161 Cma16g00541 Cma-Chr16:2769550 1.14E-06 dispersed
Cma02g00928 Cma-Chr2:5523267 Cma16g00541 Cma-Chr16:2769550 0 dispersed
Cma15g01204 Cma-Chr15:7623569 Cma16g00541 Cma-Chr16:2769550 2.57E-148 dispersed
Cma15g01297 Cma-Chr15:8208148 Cma16g00541 Cma-Chr16:2769550 0 dispersed
Cma16g00541 Cma-Chr16:2769550 Cma18g00531 Cma-Chr18:3343746 8.72E-75 dispersed
Cma16g00541 Cma-Chr16:2769550 Cma04g00682 Cma-Chr4:3467108 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g147 . . . . . . . . . Cmo16g00593 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g01568 . . . . . . Bma05g00880 . . . . . Cma16g00541 . . . . . . . . . . . . . . . . . . . . . .
Vvi2g383 . . . Bda08g00528 . . . . . Cmo16g00593 . . . . . Cpe14g00457 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g00541 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010485 1 5 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00541 Cma_Chr16 FPKM 10.094567 9.859651 63.38271 60.26329 26.115259 28.879755 27.28307 38.675674 39.845776 40.926212