Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00544 ATGGCCCCCTCCAAATTCTCCGTCGCCATCCTCCTCCTCCTTTTACGCTTATTGATTCTAGTCGGAGCTGAATCGCAGTTTCTTTGCAAGAGCTCCTCCTGCAGTGGCGTTTCCTTGCCGGCCGTTCGATTTCCGTTTCGACTGAAGAATTCGCAGGATTCTCGATGTGGATTCCAGCCGGATTTCGACCTGTTCTGCAACAATCGAAGCCAGACGATTCTCAGTCTCCCGAACGCTGGAGACCTCGTGGTGGAGTTTATCGATTACAGATTTCAGAGGCTGTGGATAAACGATCCGGATCAATGTTTTCCGAGACGACTACTTATAAACTCTTTTGATCTGGAGAACTCGCCGTTTGTTTCTAACTATCGGTTAGAAGAGTATACTGTTCTTAATTGCTCCTATTACGTCGATACGCTGCCGTTCGATCGTGTCCGGAAGATCAAATGTATGAGCGGCAGAAACCACTCTGTAATCAATGTGCCGAACAGAGACCTTAAGGCGGTTTTCGCTTTCCTGCCATCACCGTGTAACGCTATTGCGACGAAGAGGCTTCCGTTGACAGGGATGGAGCTTGAAGAAGGAATGGTGGTGAATTGGAGCGAGCCGGATTGCGGATATTGCGAGATGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGCCGAAATCGAGTGTTTCAATCTTCCAAACGGCGGTATTCCACGGGGTGCCAAATACGGGTTGATCATCGGCGTGGCAATCCCAGGCGTCCTCTTCCTAATTGGGCTGGTCTGTTTCATCTGCGGCAAGTTCAAGGCCTTTGCTCGCCTCAATAGTCCATCATCATATCTCTCTCCTTCAATGGGCCGACAGCCCACTTCCGCCGTAGCAGGCCTCGATGGGCCGACAATTGAATCATTCCCCAAAACCATATTGGGCCAGAGCCGACGACTTCCAAAGCCCGGCGACACCACTTGTGCTATTTGCCTGTCGGAGTATCAGCCGAAAGAAGCGATCAGAACCATTCCAGATTGTGGTCACTTTTTCCATGCCAATTGCGTCGATGAGTGGCTTAAGTTAAATGCCACGTGTCCGGTGTGCCGAAGCTCGCCGGAGGATTCCTCGGCGACCTCCACGCCTTCTCAGACTGTGTCGGTGTCAATGCCGACGTCCCCGGGGTCGCGCCACGCTTCGATTCCGGCACTGTTCTTCCGGCCTCCTCCCTTCTCGCCTCCGTCCTCGCGATCACTGTCGAGCTCTCATTCAGCTGAAAAGCAAGCGAGCAATCTGAGAAAATTAATCAATTACATGACTGCGCTCTAG 1308 51.76 MAPSKFSVAILLLLLRLLILVGAESQFLCKSSSCSGVSLPAVRFPFRLKNSQDSRCGFQPDFDLFCNNRSQTILSLPNAGDLVVEFIDYRFQRLWINDPDQCFPRRLLINSFDLENSPFVSNYRLEEYTVLNCSYYVDTLPFDRVRKIKCMSGRNHSVINVPNRDLKAVFAFLPSPCNAIATKRLPLTGMELEEGMVVNWSEPDCGYCEMRGGDCGFKSNSSAEIECFNLPNGGIPRGAKYGLIIGVAIPGVLFLIGLVCFICGKFKAFARLNSPSSYLSPSMGRQPTSAVAGLDGPTIESFPKTILGQSRRLPKPGDTTCAICLSEYQPKEAIRTIPDCGHFFHANCVDEWLKLNATCPVCRSSPEDSSATSTPSQTVSVSMPTSPGSRHASIPALFFRPPPFSPPSSRSLSSSHSAEKQASNLRKLINYMTAL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2796001 2799029 + CmaCh16G005440.1 Cma16g00544 311142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00544 435 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 10 385 - -
Cma16g00544 435 MobiDBLite consensus disorder prediction 364 388 - -
Cma16g00544 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 368 IPR013083 -
Cma16g00544 435 SMART ring_2 321 362 IPR001841 -
Cma16g00544 435 Pfam Ring finger domain 320 363 IPR001841 -
Cma16g00544 435 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Cma16g00544 435 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Cma16g00544 435 SUPERFAMILY RING/U-box 315 366 - -
Cma16g00544 435 CDD RING-H2_PA-TM-RING 320 363 - -
Cma16g00544 435 Pfam Wall-associated receptor kinase C-terminal 189 228 IPR032872 -
Cma16g00544 435 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00544 - - - bhj:120071243 649.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00467 Cma-Chr5:2157692 Cma16g00544 Cma-Chr16:2796001 1.56E-34 dispersed
Cma06g01059 Cma-Chr6:7121679 Cma16g00544 Cma-Chr16:2796001 7.74E-50 dispersed
Cma16g00544 Cma-Chr16:2796001 Cma08g00933 Cma-Chr8:5812322 1.63E-20 dispersed
Cma16g00060 Cma-Chr16:267653 Cma16g00544 Cma-Chr16:2796001 3.10E-89 wgd
Cma16g00544 Cma-Chr16:2796001 Cma04g00689 Cma-Chr4:3496318 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00544 Cma_Chr16 FPKM 13.39927 15.172741 8.39142 8.542982 0.0 0.0 0.696907 1.74278 1.939742 2.188975