Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00545 ATGGCTTACAGGCGCAGCCTTTGCACAAGAGCAAATCTTATAGCCCGGCAGTGTCATCCATCGATTAGTATTTTTGGTCATACTAATGACCGTAAAAATGAACATTTGGATGGAGAATCAATTTCCCTTGAAAAAATCAATAGTTTCCTGCAGAGCAGATCATTTGGAACCAGCTTTAACAAGTCATCCAGGTCTAATTTTTTTTCTCATGATAGAAAATATCCGAACACTTTCCTCTCGTCAAGTGCTGGTTCCTTTTTCTGCCGCTACATGTCAAGTACTATTGGCGAAGGGTCTGCAAAAATTGAATTCATGAGTGATGTTGCAGAAGTTCTCACAGATACAACAGTTCAATCAGCTGTATCTCAGGCTTCTGTTGCTGATGAAGTAGCCATTGCTGCTGCTGATTCTTTTCTCTCTGTCAAGGGTGTGCAGTACTTTATAGATGGTATTCATTCTTTTACTGGATTAAATTGGTGGGCTTGCATTGTATTAACAACCCTACTGATCCGTGGTGCAACAGTCCCACTTTTGATAAATCAACTCAAATCTACTGCAAAGCTTACTTTGTTAAGGCCTCACTTGGAGGAAGTTAAGACGGAGATGCAAGAAAAGGGTATGGATCCCAGGGCTGTTGCTGAGGGTCAACAAAAAATGAAAAAACTTTTTAATGAGTTTGGTGTGAGCCCATTTACTCCATTGAAGGGACTTTTTATTCAGGGTCCTGTCTTCATCAGTTTTTTCCTTGGGGTCTCAAACATGGCAGAGAAAATGCCTTCTTTTAAAAATGGTGGAGCATACTGGTTTGTTGATCTCACGACTCCAGATACTATGTACATTTTTCCAGTTTTAACTGCGCTGACATTCTGGATCACCGTGGAGTACAACATGCAAGAAGGTATGGAAGGTAATCCTATAGCTGCCACAATGAAAAATGTGATGAGGGGTCTTGCTATAGCTACGGTTCCCTTGACCATGAATTTTCCAAAGGCAATATTCTGTTACTGGGTTACATCTAACGTGTTCTCACTCGTATACGGGATTGTTCTCAAAGTTCCCGGGGTTAAGCAGGCATTGGGTGTTCCAGAAATACCTGTGGCAAATACCAATACCACTCCACAACCTGCCTTCTCGTTTCTTACAGCTATGAAGCAAGCAACAGCAGCACCTGAACCTACCGCCACCACATTAACAGCTGAACCGTCACTGTCGCAAGACCGGAAAATCCCATCGTCGTCGGTTATCAGTCAGAGGCTTAGAAGTTTGGAAAAAGAAGTGAAGGGAAGGAAAAAGATGAAGAACAAGAAAAAGTGA 1314 42.01 MAYRRSLCTRANLIARQCHPSISIFGHTNDRKNEHLDGESISLEKINSFLQSRSFGTSFNKSSRSNFFSHDRKYPNTFLSSSAGSFFCRYMSSTIGEGSAKIEFMSDVAEVLTDTTVQSAVSQASVADEVAIAAADSFLSVKGVQYFIDGIHSFTGLNWWACIVLTTLLIRGATVPLLINQLKSTAKLTLLRPHLEEVKTEMQEKGMDPRAVAEGQQKMKKLFNEFGVSPFTPLKGLFIQGPVFISFFLGVSNMAEKMPSFKNGGAYWFVDLTTPDTMYIFPVLTALTFWITVEYNMQEGMEGNPIAATMKNVMRGLAIATVPLTMNFPKAIFCYWVTSNVFSLVYGIVLKVPGVKQALGVPEIPVANTNTTPQPAFSFLTAMKQATAAPEPTATTLTAEPSLSQDRKIPSSSVISQRLRSLEKEVKGRKKMKNKKK 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2799600 2804576 + CmaCh16G005450.1 Cma16g00545 311143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00545 437 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 158 348 IPR028055 -
Cma16g00545 437 MobiDBLite consensus disorder prediction 390 419 - -
Cma16g00545 437 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEIN OXA1-RELATED 1 390 - -
Cma16g00545 437 MobiDBLite consensus disorder prediction 390 420 - -
Cma16g00545 437 Pfam 60Kd inner membrane protein 159 348 IPR001708 GO:0016021|GO:0032977
Cma16g00545 437 PANTHER OXA1 1 390 IPR001708 GO:0016021|GO:0032977
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00545 K03217 yidC, spoIIIJ, OXA1, ccfA; YidC/Oxa1 family membrane protein insertase - csv:101223070 685.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00057 Cma-Chr5:230281 Cma16g00545 Cma-Chr16:2799600 2.43E-08 dispersed
Cma05g00798 Cma-Chr5:5093788 Cma16g00545 Cma-Chr16:2799600 5.01E-21 dispersed
Cma16g00545 Cma-Chr16:2799600 Cma12g00046 Cma-Chr12:173505 2.68E-07 dispersed
Cma16g00545 Cma-Chr16:2799600 Cma04g00691 Cma-Chr4:3498732 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003609 1 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 4 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00545 Cma_Chr16 FPKM 8.461588 8.730676 12.024311 13.459917 10.446712 7.009162 10.728595 22.881866 24.975231 26.792791