Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00549 ATGAAGACTCTGTTTCGCATTTCGGTTGGATTCTTTTTGGTGTTGCTAATTTTTTACTGCAGCTTCGTTGATTCCAAGGTGGAAGAAACTGCGAACTCCAGTCTAGATTCAAAAACAGTGAATAAAGTAAACGATGCAAGCAAGGACACTGGTTCTAGTAAGGTTCTCAATTCTATTTCTGCTGGTAAGGAAAAGAAGGATGAACACCAAGTAAGCATCTCAAAGAGGGATGTTAAGAGAAGCGGGGATAAAATTAAGAAGGATTCTGAAAGTGAAACAACATCGGAAGAAGGTGCAAATAAAGTAAATAGTGACGGTGGCTTAGTTGAGAAAGGAAAGAATAAGGGAGAGAAAGAGAAGGGGAAGCCAGTAGATAATTCAGCTTCAAAGGAAGCGTCTAAGAATGGTGGGAAGGACGGCAATTTGGTAACTTCAGCATTGAAAACAAAGGATGGCTCTTCGGGTGAGGATTGTGGTTCATCAAATAAGTGCACTGATGAGGGAAATAAGTTTGTTGCTTGCTTACGAGTTCCAGGAAATGAATCTCCTCAACTTTCGTTGCTAATCCAGAACAAGGGAACAGGTCCTCTTACTGTGAAAATTTCTGCGCCCGATTTTGTTCATCTGGAGCAGAGTGAAGTTCAACTTCAAGAGAAAGAAGATAAAAAGGTAAAAGTTTCAGTCAGCAATGGAGGAGATGGAAAGGCGATCATTCTGACTGCAGGTAGCGGCCGTTGTAGTCTTGATTTTAGGGATCTTGTTGAACGCAATATTGCCAAAGATTCTGATAATCTTCCCATGTCCTCACGGTTCAGCTACCTGGCAAAGCCACCTATTATTGCATTTTTAGCTTTTGCTGTAATTCTGACAATTGCAGCTGCTTCAGTGTTCATTAGCATTCGTCGTAAAAGTTTTGCAAGTAGCAACTCTAAATACCAAAGGCTGGACATGGAGCTCCCTATTTCCATTGGAGGTAAATCCGTTGCTGACAATAACGACGGATGGGAAAACAGTTGGGATGACAATTGGGATGATGACACACCACAAAAACCTTCCCTGCCTGTTACACCAAGTCGTTCGTCGATGGGCCTTGCCTCACGACGGTTGAATAAGGAGGGCTGGAAAGATTAG 1131 42.26 MKTLFRISVGFFLVLLIFYCSFVDSKVEETANSSLDSKTVNKVNDASKDTGSSKVLNSISAGKEKKDEHQVSISKRDVKRSGDKIKKDSESETTSEEGANKVNSDGGLVEKGKNKGEKEKGKPVDNSASKEASKNGGKDGNLVTSALKTKDGSSGEDCGSSNKCTDEGNKFVACLRVPGNESPQLSLLIQNKGTGPLTVKISAPDFVHLEQSEVQLQEKEDKKVKVSVSNGGDGKAIILTAGSGRCSLDFRDLVERNIAKDSDNLPMSSRFSYLAKPPIIAFLAFAVILTIAAASVFISIRRKSFASSNSKYQRLDMELPISIGGKSVADNNDGWENSWDDNWDDDTPQKPSLPVTPSRSSMGLASRRLNKEGWKD 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2822530 2826806 + CmaCh16G005490.1 Cma16g00549 311147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00549 376 MobiDBLite consensus disorder prediction 349 365 - -
Cma16g00549 376 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1 1 376 - -
Cma16g00549 376 MobiDBLite consensus disorder prediction 42 59 - -
Cma16g00549 376 MobiDBLite consensus disorder prediction 108 127 - -
Cma16g00549 376 MobiDBLite consensus disorder prediction 42 162 - -
Cma16g00549 376 MobiDBLite consensus disorder prediction 128 162 - -
Cma16g00549 376 PANTHER DENTIN SIALOPHOSPHOPROTEIN-LIKE ISOFORM X1 1 376 - -
Cma16g00549 376 MobiDBLite consensus disorder prediction 60 95 - -
Cma16g00549 376 MobiDBLite consensus disorder prediction 334 376 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00549 - - - mcha:111008309 511.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00188 Cma-Chr6:959856 Cma16g00549 Cma-Chr16:2822530 8.14E-11 dispersed
Cma16g00549 Cma-Chr16:2822530 Cma04g00696 Cma-Chr4:3529633 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g127 . Blo03g00244 . . . . . . . Cmo16g00600 . . . . . Cpe14g00464 . . . . . . . . Cla07g01422 Cam07g1523 Cec07g1619 Cco07g1579 Clacu07g1511 Cmu07g1481 Cre07g1858 . Cone12ag0254 . . . . . . . . . . . . . . . . . . Cma16g00549 . . . . . . . . . . . . . . . . . . . Csa04g00652 Chy07g01158 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004374 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 8 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00549 Cma_Chr16 FPKM 8.619685 9.261706 8.815626 8.521849 13.286857 12.523003 13.600829 10.923868 10.743721 11.267773