Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma16g00550 | ATGGACAACAAAATGCCACAAGAACAGAACAATTCCATGAACCTCACCGACATCAGAACTCTGCTCTCTAATCTCCTCCTATCTCGCCAATCAACCAACACTCTCGATTCCATTTTCTCCTATTGTCTGCCTTCCGCCGCCCCTGTGTTGAAGCCGGCGCTGGGGTCCTCTGTGTATCTCCGCCAGAGAGATCTGGTCCACCAATTCTGCGTAGAGAATCACCATGGATGCTCGTCGCCGAATCTGCACCATCAACAACGCGACCACCCAGTTGGAATTTCAGGCGGATATGGGGCTTTTCCGGGGGCGGTGAAGAAGAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTTGCGGAGATTAGGTTGCCGCAGAACAGAATGAGGGTTTGGTTAGGGACCTATGACACGGCGGAGGCTGCCGCTTATGCCTATGACAGGGCGGCGTACAAGCTGAGAGGCGAGTATGCGAGGCTCAATTTTCCCAATTTGAAGGATTTTAGGAATTTGGGGTTTGCTGATTGTAGCCGATTGAATGCTCTGAAACACTCTGTGGATACCAAAATTCAAGCCATTTGTTTGAAGATGAAGAAGGAAAGGGGTAAAACGAGTGGCAAGAAATCGAATCCCCGAAACGGCGGCGTTTCTGCGACCTCTTCGATGTCGTCGCCGTCGCCATCTCCGGTATCGGCGGAGTGGTGTTGGAGAGGTGAAATGGTGTGTTCGTCGGCGGCGGTTTCGGAAGAAGATGGGTTTTGGAGGTCGGAGAATTCTCCTCCGGTGTCGTCGTCGTCGTCCCGGTCGGCGGCGGCGGTGGCGGGGGAAGGGGTTTGTGAAGGGTATTCATCATTGGCGAAGATGCCGTCTTTTGATCCGGATTTAATCTGGGAAGTTCTTGCAAATTAA | 915 | 52.68 | MDNKMPQEQNNSMNLTDIRTLLSNLLLSRQSTNTLDSIFSYCLPSAAPVLKPALGSSVYLRQRDLVHQFCVENHHGCSSPNLHHQQRDHPVGISGGYGAFPGAVKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDFRNLGFADCSRLNALKHSVDTKIQAICLKMKKERGKTSGKKSNPRNGGVSATSSMSSPSPSPVSAEWCWRGEMVCSSAAVSEEDGFWRSENSPPVSSSSSRSAAAVAGEGVCEGYSSLAKMPSFDPDLIWEVLAN | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 2831656 | 2832570 | + | CmaCh16G005500.1 | Cma16g00550 | 311148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma16g00550 | 304 | CDD | AP2 | 107 | 167 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | Pfam | AP2 domain | 109 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | PRINTS | Ethylene responsive element binding protein signature | 109 | 120 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | PRINTS | Ethylene responsive element binding protein signature | 131 | 147 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | Gene3D | AP2/ERF domain | 108 | 166 | IPR036955 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | SUPERFAMILY | DNA-binding domain | 108 | 165 | IPR016177 | GO:0003677 | |
Cma16g00550 | 304 | MobiDBLite | consensus disorder prediction | 203 | 230 | - | - | |
Cma16g00550 | 304 | MobiDBLite | consensus disorder prediction | 210 | 230 | - | - | |
Cma16g00550 | 304 | ProSiteProfiles | AP2/ERF domain profile. | 108 | 165 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 7 | 304 | - | - | |
Cma16g00550 | 304 | SMART | rav1_2 | 108 | 171 | IPR001471 | GO:0003700|GO:0006355 | |
Cma16g00550 | 304 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 7 | 304 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma15g01277 | Cma16g00550 | CCT | |
Cma02g00907 | Cma16g00550 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00907 | Cma-Chr2:5406104 | Cma16g00550 | Cma-Chr16:2831656 | 1.65E-56 | dispersed | |
Cma16g00550 | Cma-Chr16:2831656 | Cma09g00654 | Cma-Chr9:3113076 | 1.05E-37 | dispersed | |
Cma15g01277 | Cma-Chr15:8091619 | Cma16g00550 | Cma-Chr16:2831656 | 2.80E-60 | wgd | |
Cma16g00550 | Cma-Chr16:2831656 | Cma04g00697 | Cma-Chr4:3537107 | 7.97E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36543 | PF00847 | AP2 | 6.10E-14 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma16g00550 | - | - | bhj:120085961 | 429.098 |