Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00550 ATGGACAACAAAATGCCACAAGAACAGAACAATTCCATGAACCTCACCGACATCAGAACTCTGCTCTCTAATCTCCTCCTATCTCGCCAATCAACCAACACTCTCGATTCCATTTTCTCCTATTGTCTGCCTTCCGCCGCCCCTGTGTTGAAGCCGGCGCTGGGGTCCTCTGTGTATCTCCGCCAGAGAGATCTGGTCCACCAATTCTGCGTAGAGAATCACCATGGATGCTCGTCGCCGAATCTGCACCATCAACAACGCGACCACCCAGTTGGAATTTCAGGCGGATATGGGGCTTTTCCGGGGGCGGTGAAGAAGAAGCTGTACAGGGGAGTGAGGCAGAGGCATTGGGGGAAATGGGTTGCGGAGATTAGGTTGCCGCAGAACAGAATGAGGGTTTGGTTAGGGACCTATGACACGGCGGAGGCTGCCGCTTATGCCTATGACAGGGCGGCGTACAAGCTGAGAGGCGAGTATGCGAGGCTCAATTTTCCCAATTTGAAGGATTTTAGGAATTTGGGGTTTGCTGATTGTAGCCGATTGAATGCTCTGAAACACTCTGTGGATACCAAAATTCAAGCCATTTGTTTGAAGATGAAGAAGGAAAGGGGTAAAACGAGTGGCAAGAAATCGAATCCCCGAAACGGCGGCGTTTCTGCGACCTCTTCGATGTCGTCGCCGTCGCCATCTCCGGTATCGGCGGAGTGGTGTTGGAGAGGTGAAATGGTGTGTTCGTCGGCGGCGGTTTCGGAAGAAGATGGGTTTTGGAGGTCGGAGAATTCTCCTCCGGTGTCGTCGTCGTCGTCCCGGTCGGCGGCGGCGGTGGCGGGGGAAGGGGTTTGTGAAGGGTATTCATCATTGGCGAAGATGCCGTCTTTTGATCCGGATTTAATCTGGGAAGTTCTTGCAAATTAA 915 52.68 MDNKMPQEQNNSMNLTDIRTLLSNLLLSRQSTNTLDSIFSYCLPSAAPVLKPALGSSVYLRQRDLVHQFCVENHHGCSSPNLHHQQRDHPVGISGGYGAFPGAVKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDFRNLGFADCSRLNALKHSVDTKIQAICLKMKKERGKTSGKKSNPRNGGVSATSSMSSPSPSPVSAEWCWRGEMVCSSAAVSEEDGFWRSENSPPVSSSSSRSAAAVAGEGVCEGYSSLAKMPSFDPDLIWEVLAN 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2831656 2832570 + CmaCh16G005500.1 Cma16g00550 311148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00550 304 CDD AP2 107 167 IPR001471 GO:0003700|GO:0006355
Cma16g00550 304 Pfam AP2 domain 109 158 IPR001471 GO:0003700|GO:0006355
Cma16g00550 304 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Cma16g00550 304 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Cma16g00550 304 Gene3D AP2/ERF domain 108 166 IPR036955 GO:0003700|GO:0006355
Cma16g00550 304 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
Cma16g00550 304 MobiDBLite consensus disorder prediction 203 230 - -
Cma16g00550 304 MobiDBLite consensus disorder prediction 210 230 - -
Cma16g00550 304 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Cma16g00550 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 7 304 - -
Cma16g00550 304 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Cma16g00550 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 7 304 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma15g01277 Cma16g00550 CCT
Cma02g00907 Cma16g00550 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00907 Cma-Chr2:5406104 Cma16g00550 Cma-Chr16:2831656 1.65E-56 dispersed
Cma16g00550 Cma-Chr16:2831656 Cma09g00654 Cma-Chr9:3113076 1.05E-37 dispersed
Cma15g01277 Cma-Chr15:8091619 Cma16g00550 Cma-Chr16:2831656 2.80E-60 wgd
Cma16g00550 Cma-Chr16:2831656 Cma04g00697 Cma-Chr4:3537107 7.97E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36543 PF00847 AP2 6.10E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00550 - - bhj:120085961 429.098