Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00559 ATGGTGAAACATCGGGTGCGAAAAGGATTAACAGAGTGTAGCGGGATTGATCAAAAAACGGATGAAATTGCGGAGCAGCAGAAGATGACTAAAGCAGAAATGGAACAAAAGATGTCGAGAATCTTGAAGCTAATGAAGAACAAAGATAAAAGTAGAGTGCTGAGAGAGTCGAAGAAGGAAACGGAAGTTGTTGGTTTAGTTGAAGATCTATACAAGAATTACCAGTCTATTTATGATCAATATGGTCATCTACGAGATGAAGCCGAAAGAATTGTTAAATCTGAAAAAGAAAACGAAGAGGATAAGGAAGATGTTTGTTCTTCATCTTTAAGCTCTAGTTCCGACTCTGATTCGGAGTACTTTTCGTCGGAGGAAGTAAATACCATTAGCAGTGTTCATAATTTACCGAATGAACAGTCGAGTAACTGGTATGTTCAAATTCAAACGGAGGAACTAGAAAAGCAAATTGTTCAAAAGAATGAAGCCTTGGCTAAGGTTGATTTCCTGCATCGGGAATTAGATAGCGTACGAACCCAGAAACGCGAAATGGAAAATAGGAAGAACAAGGAGATATCTGAGAATATGGCTTTGATAGGAAATTTGAAAGAAGAATTGGTCGAAAAGATTGGAGTTGAAAAGAAGATGCTGGAAGAAAAAGACAGAGTTCTTGCTCGGAGTAAGGATCTGGAAATGGAGATAGACACTCTGCATTACCGAAGAAGGGAAATAGAAGAACAGAATATTCGGATGAGATCAGAAAATCAATGGCTCAACACTAAAATTTCTGAACTGGAAATGGCATTGACGAGTAAAGAGACGGAAGCTTCTTCTCAGACGATCGCGTTAATGGAGCAAGTCAAGAATCTGAAACATACAATAAACGGATTGCAGACCGAAAAAACCAAATTAGGGCAAGAAATGGAGCAATATAAACAAGAAGTTTCTCACCGATTTTCGAAAATAGAGGAGGAAAACAAGAAATTGAAAAGTAAAATTGTTGATCAGGAAACAATCCTAAAGGAAAAGGAGGAAGCAATAATTAAATTCAACGAGAAATACAAGAAAGCGAAGAGTTGTTTACCTGACGTTGCTTCAAGCCTAATAAATACAGAGAGGAAGATGGAAGAATTAGCCGAGGACCTCCGTTGTGGCTTGGAAGATAAAATCCGTTTATTGTCGCAGAGGATCCTCGTCGCAGAGCAGCTACACAACGAAAGCAGAGAAAATTTCAGAGTGAAAAACAAAAGACACGAGCAAGAGAAGAGACAGTTCGAACAAAAAATTGAAAAACACGAAGAGGAACTAATGAAACTCAGTAATGTGAACGAATTCGGAATGGACAGAGTAGCAAGAAGATTCGAAGAAGAGAGCGTCAAACTTCTAAATCACATATTATGGATCACAAAGGAGCTCACATTCGCAAAATACTGGGTTAGAACGAGAAATAACGAGTTAAAACAACTGAAAATCAATTTGACTCGATTCGTTGCTCAGATGGAAGAAAAAGAAGAACAAGAGTTCTTGTTAAGAGAGAAACTATGGAATCTAGAGGCGAAAATAAGCAAAGAGGGTGGAGAGAAACTGAACCTAATCAGAACCCTGGGGCAATTCGAGAAAAAGATGACAAAAATGGAGAACTTAGTAAAGGAGAAAGATGAACAAGTGTTCCGACTTGCAGAAGAAAAGAGAGAAGTGATTCGACAATTATGCGTTGTGATTGATCACTATCGAAGCCAGTCCGATCATCTCAAGGACACCATGCTCGGGACGACGGTTAGAAACAGAAGAATGATTTGA 1797 38.68 MVKHRVRKGLTECSGIDQKTDEIAEQQKMTKAEMEQKMSRILKLMKNKDKSRVLRESKKETEVVGLVEDLYKNYQSIYDQYGHLRDEAERIVKSEKENEEDKEDVCSSSLSSSSDSDSEYFSSEEVNTISSVHNLPNEQSSNWYVQIQTEELEKQIVQKNEALAKVDFLHRELDSVRTQKREMENRKNKEISENMALIGNLKEELVEKIGVEKKMLEEKDRVLARSKDLEMEIDTLHYRRREIEEQNIRMRSENQWLNTKISELEMALTSKETEASSQTIALMEQVKNLKHTINGLQTEKTKLGQEMEQYKQEVSHRFSKIEEENKKLKSKIVDQETILKEKEEAIIKFNEKYKKAKSCLPDVASSLINTERKMEELAEDLRCGLEDKIRLLSQRILVAEQLHNESRENFRVKNKRHEQEKRQFEQKIEKHEEELMKLSNVNEFGMDRVARRFEEESVKLLNHILWITKELTFAKYWVRTRNNELKQLKINLTRFVAQMEEKEEQEFLLREKLWNLEAKISKEGGEKLNLIRTLGQFEKKMTKMENLVKEKDEQVFRLAEEKREVIRQLCVVIDHYRSQSDHLKDTMLGTTVRNRRMI 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2862694 2864572 - CmaCh16G005590.1 Cma16g00559 311157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00559 598 Coils Coil 226 246 - -
Cma16g00559 598 Coils Coil 286 345 - -
Cma16g00559 598 MobiDBLite consensus disorder prediction 94 122 - -
Cma16g00559 598 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 7 88 IPR011684 GO:0003779
Cma16g00559 598 PANTHER COP1-INTERACTIVE PROTEIN 1 147 597 - -
Cma16g00559 598 PANTHER COP1-INTERACTIVE PROTEIN 1 29 156 - -
Cma16g00559 598 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 147 597 - -
Cma16g00559 598 PANTHER MYOSIN HEAVY CHAIN-LIKE PROTEIN 29 156 - -
Cma16g00559 598 Coils Coil 407 441 - -
Cma16g00559 598 Coils Coil 84 105 - -
Cma16g00559 598 Coils Coil 534 564 - -
Cma16g00559 598 Coils Coil 159 193 - -
Cma16g00559 598 MobiDBLite consensus disorder prediction 107 122 - -
Cma16g00559 598 Coils Coil 485 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00559 - - - csv:101207367 890.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00704 Cma-Chr4:3576334 Cma16g00559 Cma-Chr16:2862694 0 dispersed
Cma16g00556 Cma-Chr16:2856934 Cma16g00559 Cma-Chr16:2862694 1.46E-22 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g108 . . Bda06g00139 Bda08g00482 . Bpe07g00078 . . . Cmo16g00608 . . . . . Cpe14g00472 . . . . . . . . Cla07g01412 Cam07g1514 Cec07g1610 Cco07g1570 Clacu07g1502 Cmu07g1472 Cre07g1849 . . Cone6ag0838 . . . . Cme07g01580 . . . . . . Bma05g00855 Bma12g00049 . . . . Cma16g00559 . . . . . . . . . . . . . . . . . . . Csa04g00641 Chy07g01168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001955 2 3 1 4 1 2 2 2 2 2 1 2 3 2 2 3 2 3 2 2 2 2 2 2 2 2 2 5 3 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00559 Cma_Chr16 FPKM 0.095715 0.0 0.0 0.076208 0.574819 1.165295 0.970585 0.0 0.215764 0.0