Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00561 ATGGACAAGTTTATGATGATCATGACGATCACGACAATGATGATGATGATGGGATCATCTGTGAATGCATTCACTCATATTGTCGGCGCAAGCCATGGCTGGAGAGTACCCGATAACGTTACATTCTACGATGAATGGGCTAAGCCTAGAACTTTCGGTGTCGGAGACAAGCTCGTTTTCCCATATCGGCCTGGTGCGAACAATATAGTGGCGGTGAAGAAGACGGACTACGAAGTATGTGGTGAGGAGAATGTGATAAACATGTACTATCTAGGGCCGACCATCCTGAACCTGACCGAGGCGGGGGACTACTACTACTTCGATGGAATTGGGAAGCATTGTGAGGCTGGGCAGAAGCTGCACGTCCAAGTGGGTTCGAAGGAGGGCACTTCTGGTGCGGACCCATTGCCGTTCAACCTTGAAACTTTTGGCATTCACACGAATTTGGATCCGACCCAAAACGTAGGCCCGGCTGCAGCCCCAACCGCCGCCACGAAAGGATCCAATGCCAATGTCAACGCCAATGCCAATGCCTTGCTTGTTCCTGCGGGATTAGCCGCCATTGCCATGTTTTTCTCCACCTTTCTTTGA 591 50.59 MDKFMMIMTITTMMMMMGSSVNAFTHIVGASHGWRVPDNVTFYDEWAKPRTFGVGDKLVFPYRPGANNIVAVKKTDYEVCGEENVINMYYLGPTILNLTEAGDYYYFDGIGKHCEAGQKLHVQVGSKEGTSGADPLPFNLETFGIHTNLDPTQNVGPAAAPTAATKGSNANVNANANALLVPAGLAAIAMFFSTFL 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2870690 2871581 + CmaCh16G005610.1 Cma16g00561 311159

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00561 196 Pfam Plastocyanin-like domain 34 118 IPR003245 GO:0009055
Cma16g00561 196 PANTHER OS05G0570900 PROTEIN 6 144 - -
Cma16g00561 196 PANTHER BLUE COPPER PROTEIN 6 144 IPR039391 GO:0009055
Cma16g00561 196 SUPERFAMILY Cupredoxins 23 124 IPR008972 -
Cma16g00561 196 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055
Cma16g00561 196 Gene3D - 24 135 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00561 - - - bhj:120070306 278.87
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00561 Cma-Chr16:2870690 Cma12g01197 Cma-Chr12:9392874 2.12E-18 dispersed
Cma13g00400 Cma-Chr13:4535755 Cma16g00561 Cma-Chr16:2870690 1.41E-18 transposed
Cma16g00561 Cma-Chr16:2870690 Cma04g00707 Cma-Chr4:3587827 3.07E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g100 Blo02g01139 Blo03g00241 . Bda08g00485 Bpe05g00679 . . . . Cmo16g00610 . . . . . . . . . . . . . . Cla07g01409 Cam07g1509 Cec07g1606 Cco07g1564 Clacu07g1499 Cmu07g1469 Cre07g1846 . . Cone6ag0833 Cone9ag0832 . . . Cme07g01585 . . . . . . Bma05g00852 . . . . . Cma16g00561 . . . . . . . . . . . . . . . . . . . Csa04g00638 Chy07g01173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007925 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00561 Cma_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0