Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00563 ATGGATCATTCTGGGGCGGCCAGTAACCAGAAACCAGCAGTTGAAGTTGCCAAAGACAAGAATGGTGTGGACCAAGTGCTGCTTCGGAACTCTCGTGGAGCTTCAGCAAGGGTTAGCTTGCATGGAGGCCAAGTTCTTTCATGGAAAACTGAGAAAGGTGAAGAATTATTGTTTACCAGTACTAAGGCAGTTTTCAAGCCACCAAAAGCTGTGAGAGGAGGAATTCCAATCTGTTTTCCGCAGTTTGGGGCTCGTGGAAACCTCGAGCAGCACGGGTTTGCTCGAAACAGGATTTGGAAAATCGACGATAACCCTCCTCCTCTTACTCGTGGCGAAATCAAAGACAAATCCTGCATCGATTTGCTTCTTAAACCTTCTGAAGATGATCTGAAAATATGGCCACATAGTTTTGAATTCAGACTCAAGATCTGTTTGACAGCAGATGGCAATCTCACTTTAATATCACGAATTCGTAATATCAATTGCAAGCCTTTCAGTTTCTCCATTGCATTCCACACATATTTCTCCATTTCTGATATCAGTGAGGTAAGGGTCGAGGGGCTTGAGATTCTCGACTATCTCGACAACTTACGCGATAAACAACGGTTCACCGAGCAAGGAGACGCCTTAACGTTTGAATCTGAGATCGATCGGGTTTATCTTAGTTCTTCAGATCTCGTTGCCGTGCTTGATCATGAACGAAAACGCACATTTGTTATAAGAAAGGAAGGACTTCCAGATGTTGTGGTGTGGAATCCATGGGAGAAGAAATCGAAATCCATCGTCGATCTCGGGGACGAAGACTACAAACAGATGCTATGTGTTGATGGAGCTGCAATTGAGAAACCCATTACACTGAAGCCAGGTGAGGAATGGACTGGCCGTTTGGAACTATCCATCCTCCCCTCGAGTTAA 915 44.92 MDHSGAASNQKPAVEVAKDKNGVDQVLLRNSRGASARVSLHGGQVLSWKTEKGEELLFTSTKAVFKPPKAVRGGIPICFPQFGARGNLEQHGFARNRIWKIDDNPPPLTRGEIKDKSCIDLLLKPSEDDLKIWPHSFEFRLKICLTADGNLTLISRIRNINCKPFSFSIAFHTYFSISDISEVRVEGLEILDYLDNLRDKQRFTEQGDALTFESEIDRVYLSSSDLVAVLDHERKRTFVIRKEGLPDVVVWNPWEKKSKSIVDLGDEDYKQMLCVDGAAIEKPITLKPGEEWTGRLELSILPSS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2879056 2883193 - CmaCh16G005630.1 Cma16g00563 311161

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00563 304 Gene3D - 19 301 IPR014718 GO:0030246
Cma16g00563 304 PANTHER GLUCOSE-6-PHOSPHATE 1-EPIMERASE 5 304 - -
Cma16g00563 304 PANTHER APOSPORY-ASSOCIATED PROTEIN C-RELATED 5 304 - -
Cma16g00563 304 Pfam Aldose 1-epimerase 24 298 IPR008183 GO:0005975|GO:0016853
Cma16g00563 304 SUPERFAMILY Galactose mutarotase-like 19 298 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cma16g00563 304 CDD D-hex-6-P-epi_like 26 299 IPR025532 -
Cma16g00563 304 PIRSF PHexose_mutarotase 2 303 IPR025532 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00563 K01792 E5.1.3.15; glucose-6-phosphate 1-epimerase [EC:5.1.3.15] - csv:101205699 590.882
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g01035 Cma16g00563 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g01035 Cma-Chr6:6972375 Cma16g00563 Cma-Chr16:2879056 2.60E-134 dispersed
Cma11g00372 Cma-Chr11:1849576 Cma16g00563 Cma-Chr16:2879056 4.19E-125 dispersed
Cma12g00895 Cma-Chr12:6824512 Cma16g00563 Cma-Chr16:2879056 6.09E-150 dispersed
Cma16g00563 Cma-Chr16:2879056 Cma14g02087 Cma-Chr14:14441272 7.83E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g97 Blo02g01136 . . Bda08g00488 Bpe05g00676 . . . . Cmo16g00612 . . . . . Cpe14g00477 . . . . . . . . Cla07g01406 Cam07g1507 Cec07g1604 Cco07g1561 Clacu07g1497 Cmu07g1467 Cre07g1843 . . . . . . . Cme07g01587 . . . . . . Bma05g00849 . . . . Cma06g01035 Cma16g00563 . . . . . . . . . . . . . . . . . . . Csa04g00635 Chy07g01178 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000273 4 7 4 5 2 4 5 4 4 4 4 4 6 4 5 6 4 8 6 4 4 4 4 4 4 4 4 15 8 4 149
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00563 Cma_Chr16 FPKM 21.428856 21.448963 10.610737 10.667069 13.524271 13.827052 15.01545 12.791184 11.009264 12.656446