Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00567 ATGGCGGTCAATACGACGATGGTGGCTGGCTGTTCGACCGCAATGAAAGCAACGTCGAACGGCGTGTTTCAAGGCGACAACCCTCTTGATTTCGCTCTCCCTTTGGCTATTCTTCAGATATGTTTGGTAGTGATTCTTACGCGTCTTCTTGGGCGGAGCCAAGAATTCCTACACAGAGTATTTCCGGCGAAAAGCTTATCGGTTTTGGACACGTTGGCAAATTTGGGTCTTTTGTTCTTCCTTTTTCTGGTGGGGTTGGAGTTAGATCCCAACTCCCTCCGCCGTACCGGAAAGGGTGCAATGTCTATAGCCGCCGCCGGAATCACCCTCCCTTTCATCCTCGGCATTGGCACCTCCTTTGTCCTCCGCTCCACCATCTCCAAAGGCGTCGACGGCCCTCCTTTTCTCGTTTTCATGGGCGTAGCTCTCTCCATTACTGCCTTCCCTGTCCTTGCCCGCATCCTCGCCGAGCTCAAGCTCTTAACCACCAGCGTTGGTCGAATGGCCATGTCCGCCGCCGCCGTTAACGACGTCGCCGCCTGGATCCTCCTCGCCCTTGCCATCGCCCTCTCCGGCACCGGCAACTCCCCTCTCGTTGCCCTCTGGGTCTTCCTCTGTGGCTCTGGTTTTGTCCTGCTCTGCTTCTTCACTCTCCCACCGGTCTTCCGGTGGATATCTCTCCGTTGCGCCGACGGCGAGCCGGTTAGCGAACTCTACATTTGCGCCACTTTATCCACCGTCTTGGCCGCTGGATTCATCACCGATTTAATCGGAATCCATGCTCTGTTCGGGGCTTTCGTCGTCGGCGTCCTCGTCCCAAAAGACGGCCCACTCGCCGGAGCTCTTGTCGAGAAAGTCGAAGATCTCGTCTCGGGGTTATTCCTCCCTCTGTATTTCGTATCAAGTGGATTGAAAACCGACATTACAACAATCAAAGGAGCTCAATCATGGGGTCTTCTCGTACTTGTCGTTGTCACCTCTTGTTTTGGGAAAATCATCGGCACAATATCAGTGGCTCTGCTTTGCAAGATGCCATTCCGTGAATCTCTGGCTTTAGGATTCTTAATGAACACAAAAGGGCTAGTGGAATTGATCGTCCTCAACATTGGGAAAGACAGAAAAGTTTTAAACGAACAGACCTTCGCAATTCTTGTTCTAATGGCGATCATCACAACCTTCATCACTACCCCAATTGTAATGGCGGTTTACAAGCCGGCCAAAAAACAGAGCAAATCCGATTACACGAACAGGACAATCGAGCGCCAGGACACCAATTCTGAGCTGAGGATTTTGGCTTGCTTTCACTCTGTTACCAACATCCCTTCAATTTTGAATCTAATTGAGGTTTCCCGTGGGACGGAGGGGAAAGAAGCCCGTGGTCGGCGGCTTTGCGTTTATGCAATGCATTTAATGGAGCTGACAGAGAGGTCGTCCGCCATTGTTATGGTCCACCGAGCTCGAAAAAATGGCCTACCCTTCTGGAATAAAGGAGGAAAGTCCGATTCCGACCAAATCGTTGTGGCGTTTGAGGCTTTTCAGCAGCTAAGTCGAGTGTCTATTCGTCCAATGACAGCGATATCTCCGTTCTCCAACATGCACGAAGATGTCTGCAACAGCGCCGAGAGGAAACGCGCCGCCATTATCATCCTCCCATTCCACAAACACCAAAGGTTCGATGGATCTTTGGAGACGACACGAGCTGATTTCCGATGGGTAAATCAAAAAGTGCTGGAGCACCCACCATGCTCTGTCGGGATCTTGGTCGACAGAGGTTTAGGAGGCGGTTCCCATATCTGTGCTAGCAATGTCTCATCCACCATAACCGTCTTCTTCTTCGGCGGGCGAGACGACCGTGAAGCTCTAGCCTACGGTCGGAGAATGGCAGAGCATCCGGGAATAACACTAAACGTGGTTCGCTTCCTTCCCAGCTCCGACATGGGCATGGAATCCACGGTGGTTGACATTGATCAAACAATACTGACGGAGTTCAAGGAGAAGAAATCAGAGGACGAGTCGGTGAGGTATGAGGAGAGGGCGGTGGGGAAAGGCAGCGAGGCGGTTGAAGTAATCAAGGAGTTCAGTCGATGCCATTTGATATTGGTGGGTCAGGCACCGGAAGGGCCAGTCGTGGAGAGCCTCCATTTGAAGATCAATGCCGTGTTCTCGGAGTTGGGTCCCGTCGGCGGCTTGTTGACATCACCGGAGCTCTCGACGGCAGCTTCAGTGTTGGTGGTGCAACAGTTTCGAGGTCCGTTGGTGCCATCTCCGTCGACGTCCACAGTCATGGTCTTGCCGGAAGACGTTGAGTAA 2310 52.38 MAVNTTMVAGCSTAMKATSNGVFQGDNPLDFALPLAILQICLVVILTRLLGRSQEFLHRVFPAKSLSVLDTLANLGLLFFLFLVGLELDPNSLRRTGKGAMSIAAAGITLPFILGIGTSFVLRSTISKGVDGPPFLVFMGVALSITAFPVLARILAELKLLTTSVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVALWVFLCGSGFVLLCFFTLPPVFRWISLRCADGEPVSELYICATLSTVLAAGFITDLIGIHALFGAFVVGVLVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTDITTIKGAQSWGLLVLVVVTSCFGKIIGTISVALLCKMPFRESLALGFLMNTKGLVELIVLNIGKDRKVLNEQTFAILVLMAIITTFITTPIVMAVYKPAKKQSKSDYTNRTIERQDTNSELRILACFHSVTNIPSILNLIEVSRGTEGKEARGRRLCVYAMHLMELTERSSAIVMVHRARKNGLPFWNKGGKSDSDQIVVAFEAFQQLSRVSIRPMTAISPFSNMHEDVCNSAERKRAAIIILPFHKHQRFDGSLETTRADFRWVNQKVLEHPPCSVGILVDRGLGGGSHICASNVSSTITVFFFGGRDDREALAYGRRMAEHPGITLNVVRFLPSSDMGMESTVVDIDQTILTEFKEKKSEDESVRYEERAVGKGSEAVEVIKEFSRCHLILVGQAPEGPVVESLHLKINAVFSELGPVGGLLTSPELSTAASVLVVQQFRGPLVPSPSTSTVMVLPEDVE 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2919666 2922709 + CmaCh16G005670.1 Cma16g00567 311165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00567 769 Gene3D - 31 413 IPR038770 -
Cma16g00567 769 PANTHER CATION/H + ANTIPORTER 10 752 - -
Cma16g00567 769 Pfam Sodium/hydrogen exchanger family 63 398 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma16g00567 769 Gene3D - 458 714 - -
Cma16g00567 769 PANTHER CATION/H(+) ANTIPORTER 17 10 752 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00567 Cma-Chr16:2919666 Cma16g00569 Cma-Chr16:2931153 0 dispersed
Cma16g00567 Cma-Chr16:2919666 Cma16g00568 Cma-Chr16:2924699 0 tandem
Cma02g00628 Cma-Chr2:3792971 Cma16g00567 Cma-Chr16:2919666 0 transposed
Cma07g01365 Cma-Chr7:7791401 Cma16g00567 Cma-Chr16:2919666 6.11E-136 transposed
Cma20g01053 Cma-Chr20:7858032 Cma16g00567 Cma-Chr16:2919666 8.18E-172 transposed
Cma16g00567 Cma-Chr16:2919666 Cma04g00715 Cma-Chr4:3619731 2.10E-174 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00567 - - csv:101203169 1248.42