Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00568 ATGGCGACCAATGCGACGGTGACCGGTGCTTGTCCGGCGGTCATGAAGGCCACCTCTAATGGCGTCTTCCAAGGCGATAATCCTTTGAATTATGCTCTCCCTCTCGCCATCCTTCAGATTTGTCTCGTCGTCCTCCTCACTCGACTTCTTTCCATTCTTCTCCGCCCCATTCGTCAGCCTCGTGTTATTGCTGAGATTGTCGGCGGGATCTTACTGGGTCCGTCGGCGCTGGGCCGGAACGTGAATTACTTGCACACAATCTTTCCGGCGAGGAGTCTCACTGTATTGGACACGTTAGCCAATTTGGGTCTTCTCTTCTTCCTGTTTCTGGTGGGGTTGGAGTTGGACCCAAAAGCTCTCCGCCGCACCGGAAAACGAGCGATGTGCATTGCCTTTGCCGGAATCACTCTCCCGTTTGTCTTTGGCATCGGCACCTCATTTATACTCCGATCAACCATCTCCAAAGGCGTCAATCAAGGCGCACTCCTCGTCTTCATGGGTGTAGCTCTTTCCATCACTGCATTTCCTGTTCTGGCTCGAATTTTGGCTGAGCTTAAGCTTTTAACGACGGATGTTGGCCGGATGGCCATGTCTGCTGCCGCCGTAAATGACGTTGCTGCATGGATTCTTCTAGCATTGGCGATTTCACTCTCCGGCACCGGACACTCCCCTTTGGTTTCCTTATGGGTTTTTCTCTCTGGCTCTGTTTTTGTCGTGATCTGCATCTTCTCTGCTCCACCTCTGTTCCGGTGGATGTCGCAACGCTGCTCCGAAGGCGAGCCGGTGAAGGAGTTGTACATTTGTGCTACTTTGTCTCTGGTTTTGGCGGCTGGGTTCATTACGGATTTGATCGGAATCCATGCCTTGTTCGGAGCTTTCGTCATCGGAGTTTTGGTTCCGAAAGAAGGCCCATTCGCCGTCGCTCTAGTGGAGAAAGTTGAAGATCTCGTGTCGGGTCTTTTTCTTCCATTATACTTCGTTTCCAGTGGGTTGAAAACAGATGTTGCAACAATTCGAGGAGCTCAATCATGGGGTCTTCTCGTTCTAGTCATTTTCAATGCTTGTTTCGGTAAAATCATCGGAACTGTCTCTGTTGCTCTGCTCTGCAAAATGCCATTTAAAGAATCAGTAGCTTTGGGGGTTTTAATGAACACCAAAGGATTGGTGGAATTAATTGTTCTTAACATTGGAAGAGACAGGAAGGTTTTGAATGATCAATCATTTGCGATTATGGTTCTAATGGCGATCTTCACAACGTTCATAACAACCCCTGTTGTTATAGCTGTTTATAAGCCGGAGAAAAAACAGAGCAAATCAAATTACAAACATAGAACACTCGAAAGAGAGAATCCCAATTCTGAGCTTCGAATTCTTGCTTGTTTCCACTCATTTAGCAACATTCCGGCGACGATTAATTTAATCGAGGCATCCCGAGGGATTGAAAAGAAGGAAGGGCTCTGTGTTTATGCTCTGCATTTAATGGAGCTAACAGAGCGATCCTCTGCCATTCTTATGGTTCATAAAGCAAGGAAGAATGGCGTACCCTTTTGGAACAAAGGCCGTGCCGATTCGAACCAGATCGTCGTTGCCTTCGAGGCATTCCGACAGCTCAGCCGTGTTTCAATCCGGCCAATGACCGCCATTTCTGCTCTGTCCAACTTGCATGAAGACATCTGTAACAGCGCCGAGACGAAAAGGGCCGCCATTATTATTCTCCCGTTTCACAAGCATCAAAGATTGGACGGATCATTGGAAACGACAAGGACTGATTACCGGTCGGTCAACCGAAAAGTTCTGGAACTAGCCCCCTGCTCTGTCGGAATTTTGATCGACAGAGGCCTCGGTGGTGGGGCCCACGTCTGCGCTAGTAATGTCTCTTCTACTGTTACCGTGTTTTTCTTCGGCGGTCGTGACGACCGTGAAGCTCTGGCATTTGGGAAAAGAATGTCAGAGCATCCGGGAATCAGCCTACATGTCGTCCGGTTCTCCCCCAGCGCCGATTTCGCGGCGGAATCCGTCACCGTCGATGTAAGAGACAACGGTTCCACCGATTCCGATGCCGATAAAAGGGCATTGGCGTCGATTGTATATGAAGAGAGATACGTGACGAAAGGGAGCCAAGCCGTTGAAGCGATGAAGGAGTTTAATAAATGTAATTTGATTTTGATCGGAAGAATGCCGGAAGGGGAAGTGGTGAGGAGTTTGAATATGAATGTTGTCGAGAGTTCGGAACTTGGGCCGGTCGGCGGCGTGTTGGCGTTGCCGGAGTTTTCGACGATGGCGTCGGTGCTGGTGGTGCAGCAGTTTCATGACGAACCTTGCGGAGGAACCCTTAGATTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCAACATTCTCGCTTCCGCTTTGTCCACCATTACTCGCGCAGGTCGGACACTCGCGTACTGGAAGATTGCCATTGTAGTTCGTTTCTTCATCTAG 2475 49.29 MATNATVTGACPAVMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIVGGILLGPSALGRNVNYLHTIFPARSLTVLDTLANLGLLFFLFLVGLELDPKALRRTGKRAMCIAFAGITLPFVFGIGTSFILRSTISKGVNQGALLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAISLSGTGHSPLVSLWVFLSGSVFVVICIFSAPPLFRWMSQRCSEGEPVKELYICATLSLVLAAGFITDLIGIHALFGAFVIGVLVPKEGPFAVALVEKVEDLVSGLFLPLYFVSSGLKTDVATIRGAQSWGLLVLVIFNACFGKIIGTVSVALLCKMPFKESVALGVLMNTKGLVELIVLNIGRDRKVLNDQSFAIMVLMAIFTTFITTPVVIAVYKPEKKQSKSNYKHRTLERENPNSELRILACFHSFSNIPATINLIEASRGIEKKEGLCVYALHLMELTERSSAILMVHKARKNGVPFWNKGRADSNQIVVAFEAFRQLSRVSIRPMTAISALSNLHEDICNSAETKRAAIIILPFHKHQRLDGSLETTRTDYRSVNRKVLELAPCSVGILIDRGLGGGAHVCASNVSSTVTVFFFGGRDDREALAFGKRMSEHPGISLHVVRFSPSADFAAESVTVDVRDNGSTDSDADKRALASIVYEERYVTKGSQAVEAMKEFNKCNLILIGRMPEGEVVRSLNMNVVESSELGPVGGVLALPEFSTMASVLVVQQFHDEPCGGTLRFSGHWILTNVCVTQANILASALSTITRAGRTLAYWKIAIVVRFFI 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2924699 2931090 + CmaCh16G005680.1 Cma16g00568 311166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00568 824 Pfam Sodium/hydrogen exchanger family 41 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma16g00568 824 Gene3D - 35 440 IPR038770 -
Cma16g00568 824 PANTHER CATION/H(+) ANTIPORTER 17 10 772 - -
Cma16g00568 824 PANTHER CATION/H + ANTIPORTER 10 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00568 - - - csv:101202937 1266.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00715 Cma-Chr4:3619731 Cma16g00568 Cma-Chr16:2924699 0 dispersed
Cma16g00568 Cma-Chr16:2924699 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma16g00567 Cma-Chr16:2919666 Cma16g00568 Cma-Chr16:2924699 0 tandem
Cma16g00568 Cma-Chr16:2924699 Cma16g00569 Cma-Chr16:2931153 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g76 . . . . Bpe05g00671 . . . . Cmo16g00619 . . . . . . . . . . . . . . Cla07g00721 Cam07g0776 Cec07g0839 Cco07g0814 Clacu07g0761 Cmu07g0768 Cre07g1119 . . . . . . . Cme07g01597 . . . . . . . . . . . . Cma16g00568 . . . . . . . . . . . . . . . . . . . Csa04g00627 Chy07g01186 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00628 . 10 790 Antiporter Super Family AT2G13620 71.0 0.0e+00 1107.0
Cma20g01053 . 10 729 Antiporter Super Family AT2G13620 63.9 8.1e-273 937.2
Cma03g00436 . 75 843 Antiporter Super Family AT3G53720 67.0 1.9e-279 959.1
Cma07g00971 . 75 821 Antiporter Super Family AT3G53720 64.0 3.2e-263 905.2
Cma16g00569 . 1 797 Antiporter Super Family AT5G41610 68.9 5.9e-308 1053.9
Cma16g00568 . 1 770 Antiporter Super Family AT5G41610 67.7 1.4e-293 1006.1
Cma16g00567 . 1 750 Antiporter Super Family AT5G41610 63.8 1.6e-276 949.5
Cma04g00715 . 7 750 Antiporter Super Family AT5G41610 63.1 6.8e-272 934.1
Cma03g00436 . 8 818 Antiporter Super Family AT5G41610 51.5 4.3e-210 728.8
Cma07g00971 . 8 804 Antiporter Super Family AT5G41610 50.3 2.5e-205 713.0
Cma16g00568 . 1 769 Antiporter Super Family AT4G23700 66.1 1.1e-288 989.9
Cma16g00569 . 1 779 Antiporter Super Family AT4G23700 63.5 7.1e-277 950.7
Cma16g00567 . 11 769 Antiporter Super Family AT4G23700 61.3 9.3e-269 923.7
Cma04g00715 . 17 748 Antiporter Super Family AT4G23700 59.5 3.1e-256 882.1
Cma16g00569 . 5 779 Antiporter Super Family AT3G17630 64.6 2.3e-272 935.6
Cma16g00568 . 4 769 Antiporter Super Family AT3G17630 63.5 4.3e-271 931.4
Cma16g00567 . 4 769 Antiporter Super Family AT3G17630 59.9 7.4e-255 877.5
Cma04g00715 . 9 748 Antiporter Super Family AT3G17630 57.7 1.5e-239 826.6
Cma03g00436 . 2 808 Antiporter Super Family AT3G17630 51.6 8.3e-206 714.5
Cma07g00971 . 8 805 Antiporter Super Family AT3G17630 50.7 1.5e-199 693.7
Cma16g00568 . 11 769 Antiporter Super Family AT1G64170 58.5 8.4e-238 820.8
Cma16g00569 . 10 789 Antiporter Super Family AT1G64170 56.4 4.4e-231 798.5
Cma16g00567 . 15 750 Antiporter Super Family AT1G64170 55.9 4.9e-222 768.5
Cma04g00715 . 11 750 Antiporter Super Family AT1G64170 52.8 4.9e-214 741.9
Cma02g00628 . 10 790 Antiporter Super Family AT2G13620 71.0 0.0e+00 1107.0
Cma20g01053 . 10 729 Antiporter Super Family AT2G13620 63.9 8.1e-273 937.2
Cma16g00568 . 11 769 Antiporter Super Family AT1G64170 58.5 8.4e-238 820.8
Cma16g00569 . 10 789 Antiporter Super Family AT1G64170 56.4 4.4e-231 798.5
Cma16g00567 . 15 750 Antiporter Super Family AT1G64170 55.9 4.9e-222 768.5
Cma04g00715 . 11 750 Antiporter Super Family AT1G64170 52.8 4.9e-214 741.9
Cma16g00568 . 1 769 Antiporter Super Family AT4G23700 66.1 1.1e-288 989.9
Cma16g00569 . 1 779 Antiporter Super Family AT4G23700 63.5 7.1e-277 950.7
Cma16g00567 . 11 769 Antiporter Super Family AT4G23700 61.3 9.3e-269 923.7
Cma04g00715 . 17 748 Antiporter Super Family AT4G23700 59.5 3.1e-256 882.1
Cma16g00569 . 1 797 Antiporter Super Family AT5G41610 68.9 5.9e-308 1053.9
Cma16g00568 . 1 770 Antiporter Super Family AT5G41610 67.7 1.4e-293 1006.1
Cma16g00567 . 1 750 Antiporter Super Family AT5G41610 63.8 1.6e-276 949.5
Cma04g00715 . 7 750 Antiporter Super Family AT5G41610 63.1 6.8e-272 934.1
Cma03g00436 . 8 818 Antiporter Super Family AT5G41610 51.5 4.3e-210 728.8
Cma07g00971 . 8 804 Antiporter Super Family AT5G41610 50.3 2.5e-205 713.0
Cma16g00569 . 5 779 Antiporter Super Family AT3G17630 64.6 2.3e-272 935.6
Cma16g00568 . 4 769 Antiporter Super Family AT3G17630 63.5 4.3e-271 931.4
Cma16g00567 . 4 769 Antiporter Super Family AT3G17630 59.9 7.4e-255 877.5
Cma04g00715 . 9 748 Antiporter Super Family AT3G17630 57.7 1.5e-239 826.6
Cma03g00436 . 2 808 Antiporter Super Family AT3G17630 51.6 8.3e-206 714.5
Cma07g00971 . 8 805 Antiporter Super Family AT3G17630 50.7 1.5e-199 693.7
Cma03g00436 . 75 843 Antiporter Super Family AT3G53720 67.0 1.9e-279 959.1
Cma07g00971 . 75 821 Antiporter Super Family AT3G53720 64.0 3.2e-263 905.2
Cma17g00962 . 47 790 Antiporter Super Family AT3G52080 54.0 4.0e-232 802.0
Cma08g00518 . 90 833 Antiporter Super Family AT3G52080 54.1 7.0e-229 791.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00568 Cma_Chr16 FPKM 0.153131 0.0 0.175861 0.380767 0.043057 0.119053 0.048374 0.16942 0.150118 0.130903