Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00568 ATGGCGACCAATGCGACGGTGACCGGTGCTTGTCCGGCGGTCATGAAGGCCACCTCTAATGGCGTCTTCCAAGGCGATAATCCTTTGAATTATGCTCTCCCTCTCGCCATCCTTCAGATTTGTCTCGTCGTCCTCCTCACTCGACTTCTTTCCATTCTTCTCCGCCCCATTCGTCAGCCTCGTGTTATTGCTGAGATTGTCGGCGGGATCTTACTGGGTCCGTCGGCGCTGGGCCGGAACGTGAATTACTTGCACACAATCTTTCCGGCGAGGAGTCTCACTGTATTGGACACGTTAGCCAATTTGGGTCTTCTCTTCTTCCTGTTTCTGGTGGGGTTGGAGTTGGACCCAAAAGCTCTCCGCCGCACCGGAAAACGAGCGATGTGCATTGCCTTTGCCGGAATCACTCTCCCGTTTGTCTTTGGCATCGGCACCTCATTTATACTCCGATCAACCATCTCCAAAGGCGTCAATCAAGGCGCACTCCTCGTCTTCATGGGTGTAGCTCTTTCCATCACTGCATTTCCTGTTCTGGCTCGAATTTTGGCTGAGCTTAAGCTTTTAACGACGGATGTTGGCCGGATGGCCATGTCTGCTGCCGCCGTAAATGACGTTGCTGCATGGATTCTTCTAGCATTGGCGATTTCACTCTCCGGCACCGGACACTCCCCTTTGGTTTCCTTATGGGTTTTTCTCTCTGGCTCTGTTTTTGTCGTGATCTGCATCTTCTCTGCTCCACCTCTGTTCCGGTGGATGTCGCAACGCTGCTCCGAAGGCGAGCCGGTGAAGGAGTTGTACATTTGTGCTACTTTGTCTCTGGTTTTGGCGGCTGGGTTCATTACGGATTTGATCGGAATCCATGCCTTGTTCGGAGCTTTCGTCATCGGAGTTTTGGTTCCGAAAGAAGGCCCATTCGCCGTCGCTCTAGTGGAGAAAGTTGAAGATCTCGTGTCGGGTCTTTTTCTTCCATTATACTTCGTTTCCAGTGGGTTGAAAACAGATGTTGCAACAATTCGAGGAGCTCAATCATGGGGTCTTCTCGTTCTAGTCATTTTCAATGCTTGTTTCGGTAAAATCATCGGAACTGTCTCTGTTGCTCTGCTCTGCAAAATGCCATTTAAAGAATCAGTAGCTTTGGGGGTTTTAATGAACACCAAAGGATTGGTGGAATTAATTGTTCTTAACATTGGAAGAGACAGGAAGGTTTTGAATGATCAATCATTTGCGATTATGGTTCTAATGGCGATCTTCACAACGTTCATAACAACCCCTGTTGTTATAGCTGTTTATAAGCCGGAGAAAAAACAGAGCAAATCAAATTACAAACATAGAACACTCGAAAGAGAGAATCCCAATTCTGAGCTTCGAATTCTTGCTTGTTTCCACTCATTTAGCAACATTCCGGCGACGATTAATTTAATCGAGGCATCCCGAGGGATTGAAAAGAAGGAAGGGCTCTGTGTTTATGCTCTGCATTTAATGGAGCTAACAGAGCGATCCTCTGCCATTCTTATGGTTCATAAAGCAAGGAAGAATGGCGTACCCTTTTGGAACAAAGGCCGTGCCGATTCGAACCAGATCGTCGTTGCCTTCGAGGCATTCCGACAGCTCAGCCGTGTTTCAATCCGGCCAATGACCGCCATTTCTGCTCTGTCCAACTTGCATGAAGACATCTGTAACAGCGCCGAGACGAAAAGGGCCGCCATTATTATTCTCCCGTTTCACAAGCATCAAAGATTGGACGGATCATTGGAAACGACAAGGACTGATTACCGGTCGGTCAACCGAAAAGTTCTGGAACTAGCCCCCTGCTCTGTCGGAATTTTGATCGACAGAGGCCTCGGTGGTGGGGCCCACGTCTGCGCTAGTAATGTCTCTTCTACTGTTACCGTGTTTTTCTTCGGCGGTCGTGACGACCGTGAAGCTCTGGCATTTGGGAAAAGAATGTCAGAGCATCCGGGAATCAGCCTACATGTCGTCCGGTTCTCCCCCAGCGCCGATTTCGCGGCGGAATCCGTCACCGTCGATGTAAGAGACAACGGTTCCACCGATTCCGATGCCGATAAAAGGGCATTGGCGTCGATTGTATATGAAGAGAGATACGTGACGAAAGGGAGCCAAGCCGTTGAAGCGATGAAGGAGTTTAATAAATGTAATTTGATTTTGATCGGAAGAATGCCGGAAGGGGAAGTGGTGAGGAGTTTGAATATGAATGTTGTCGAGAGTTCGGAACTTGGGCCGGTCGGCGGCGTGTTGGCGTTGCCGGAGTTTTCGACGATGGCGTCGGTGCTGGTGGTGCAGCAGTTTCATGACGAACCTTGCGGAGGAACCCTTAGATTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCAACATTCTCGCTTCCGCTTTGTCCACCATTACTCGCGCAGGTCGGACACTCGCGTACTGGAAGATTGCCATTGTAGTTCGTTTCTTCATCTAG 2475 49.29 MATNATVTGACPAVMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRLLSILLRPIRQPRVIAEIVGGILLGPSALGRNVNYLHTIFPARSLTVLDTLANLGLLFFLFLVGLELDPKALRRTGKRAMCIAFAGITLPFVFGIGTSFILRSTISKGVNQGALLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAISLSGTGHSPLVSLWVFLSGSVFVVICIFSAPPLFRWMSQRCSEGEPVKELYICATLSLVLAAGFITDLIGIHALFGAFVIGVLVPKEGPFAVALVEKVEDLVSGLFLPLYFVSSGLKTDVATIRGAQSWGLLVLVIFNACFGKIIGTVSVALLCKMPFKESVALGVLMNTKGLVELIVLNIGRDRKVLNDQSFAIMVLMAIFTTFITTPVVIAVYKPEKKQSKSNYKHRTLERENPNSELRILACFHSFSNIPATINLIEASRGIEKKEGLCVYALHLMELTERSSAILMVHKARKNGVPFWNKGRADSNQIVVAFEAFRQLSRVSIRPMTAISALSNLHEDICNSAETKRAAIIILPFHKHQRLDGSLETTRTDYRSVNRKVLELAPCSVGILIDRGLGGGAHVCASNVSSTVTVFFFGGRDDREALAFGKRMSEHPGISLHVVRFSPSADFAAESVTVDVRDNGSTDSDADKRALASIVYEERYVTKGSQAVEAMKEFNKCNLILIGRMPEGEVVRSLNMNVVESSELGPVGGVLALPEFSTMASVLVVQQFHDEPCGGTLRFSGHWILTNVCVTQANILASALSTITRAGRTLAYWKIAIVVRFFI 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2924699 2931090 + CmaCh16G005680.1 Cma16g00568 311166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00568 824 Pfam Sodium/hydrogen exchanger family 41 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma16g00568 824 Gene3D - 35 440 IPR038770 -
Cma16g00568 824 PANTHER CATION/H(+) ANTIPORTER 17 10 772 - -
Cma16g00568 824 PANTHER CATION/H + ANTIPORTER 10 772 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00715 Cma-Chr4:3619731 Cma16g00568 Cma-Chr16:2924699 0 dispersed
Cma16g00568 Cma-Chr16:2924699 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma16g00567 Cma-Chr16:2919666 Cma16g00568 Cma-Chr16:2924699 0 tandem
Cma16g00568 Cma-Chr16:2924699 Cma16g00569 Cma-Chr16:2931153 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00568 - - csv:101202937 1266.52