Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00569 ATGGCTTCAAATGCTACGACAGTAACCAAATGTCCATCTCCAATGAAAGCAACATCAAATGGCATTTTCCAGGGCGATAATCCTCTTGATTTCGCTCTTCCTCTTGTTATTCTACAAATATGTTTGGTAGTTGTTCTTACTCGTGGTCTTGCTTTTCTTCTGAGGCCGTTAAAACAGCCGCGAGTGATCGGAGAAATCATTGGAGGAATACTTCTAGGACCATCAGCTCTCGGACGTAACAAGAACTTTCTTCATACCATATTTCCATCCAATAGTATCACGTTGTTAGATACCATAGCAAACATTGGATTGTTATTCTTTCTGTTTCTTGTGGGTCTAGAGTTGGATATAAAGTCGATACGTCGTACTGGAAAGAAGGCTCTTGGCATTGCCATTACCGGAATTTGCCTTCCGTTTGCATTAGGAATTGGATCGTCATTTGTTCTTCGAGAAACCATATCCAAAGGTGTAAATGCTTCTGCGTTTCTCATATTCATGGGTGTTGCACTTTCGATAACGGCATTTCCCGTCTTAGCTCGTATTCTTGCCGAGCTTAAACTACTGACAACTGATGTTGGTAGGATGGCTATGTCTGCTGCAGCAGTAAACGATGTAGCTGCCTGGATTCTCCTTGCTCTAGCCATTGCGTTATCTGGTTCTGATAAATCTCCCCTAACTGCAGTTTGGGTCCTTTTATCTGGCTGTGGCTTTGTTATAGCTGCTATTGTCATTTTATCCCCTGTTTTCAAATGGATGACCAAGCAGTGTTTTCAAGGGGAGCCGGTACGTGAAATCTACATATGCGCTACATTGGCTATCGTCCTAGCTGCTGGATTTGCCACGGATTTTATCGGGATACATGCTATGTTTGGAGCTTTTGTTGTCGGAGTATTAGTTCCAAAGGATGGACCATTAGTAGGTGCTTTGGTCGAGAAAATAGAAGATCTTGTTTCTGGTCTATTCCTGCCTCTTTACTTTGTCTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAAGGAGCACAGTCCTGGGGTCTCCTAGTTTTAGTTATCGTTACCGCCTGTTCTGGAAAAATCATCGGCACGTTTCTCGTGTCCATTCTTTGTAAAGTACCCGTTCGTGAGGCTCTTGCATTAGGATTTCTAATGAACACAAAAGGGTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGACAGAAAGGTTTTGAATGACCAAACCTTTGCTATAATGATTCTAATGGCTCTTTTTACTACTTTCATTACCACTCCCCTTGTCATTGCTGTATACAAACCGGCAAGGAGTGCCAAAATAGCTGATTATAAGCATAGGAAGATTGAAAGGAAAAACAAGAACACACAACTTCGGATTATGACCTGTTTTCATAGTGCAGGAAACATTCCGTCGATTATTAATCTGCTCGAGGTGTCGAGAGGAACCGAGAAGGACAAAGAGCTTTGTGTATATGCAATGCATCTCATGGAGCTGTCCGAGAGGTCCTCGGCCATTTTAATGGTTCACAAGGCGAGGAAAAATGGGTTGCCTTTCTCGATCAAGGGTCGGAGGTCAGATACCAACCATGTTATTGTCGCATTTGAAGCTTACCAACAACTGAGCAGAGTATTCATTCGACCGATGACGGCGATCTCCTCCATGTCTGATATACATGAAGATATTTGTGCCACTGCTGAGAGGAAAAAAACTGCGATCATAATTCTTCCATTTCATAAGCACCAGAGGGTGGATGGTTCACTGGAGACTACTCGAAGCAGCATTCGTGTTGTTAATCAGAATGTACTCGAACATGCTCGATGTTCGGTTGGAATTTTAGTTGATCGTAGTTTGGGTGGAACAACCCATGTTTCATCGAGCCATGTTTCGCTTTTTGTCACTGTTTTATTCTTTGGTGGTGGAGATGATCGCGAAGCGCTTTCTTATGGAATTCGTATGGCTGAGCACCCTGGGATTAGATTGATGGTTATTCGTTTCTTTGTCGAACCCGAACCTTCCGGGGAGATAGTCAGTGCTGATACTGTTGGGAATTCTCCTGTGAAGTCAGTTTCTCAGGATGATGAATTTCTTTCCGAATTCAAGCACGATGCGTGCAAGAACGATTCCATCATATATGTCGAGAAAACCATAAGAAGTGCTACAGAAGTAATGGATACAGTGCAGGAGATGAAAAATTGCAATCTGTATCTCGTTGGCCGAACACCAGATGTCAAAGCGATGTATATCTTAAACAGAAGTGACTGTCCAGAGCTCGGTCCAGTCGGGAACCTGTTGACTTCCCCAAATTTCCCGATTTTGGCGTCGGTTTTGGTGGTGCAGCAATATCGTTCCGAGTCGCTGGTGAATTCAGCTTCAGATTCTGGTGGTGGAGAAACAGAATCAGCATAG 2400 43.12 MASNATTVTKCPSPMKATSNGIFQGDNPLDFALPLVILQICLVVVLTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKNFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDIKSIRRTGKKALGIAITGICLPFALGIGSSFVLRETISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVIAAIVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFATDFIGIHAMFGAFVVGVLVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACSGKIIGTFLVSILCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSAKIADYKHRKIERKNKNTQLRIMTCFHSAGNIPSIINLLEVSRGTEKDKELCVYAMHLMELSERSSAILMVHKARKNGLPFSIKGRRSDTNHVIVAFEAYQQLSRVFIRPMTAISSMSDIHEDICATAERKKTAIIILPFHKHQRVDGSLETTRSSIRVVNQNVLEHARCSVGILVDRSLGGTTHVSSSHVSLFVTVLFFGGGDDREALSYGIRMAEHPGIRLMVIRFFVEPEPSGEIVSADTVGNSPVKSVSQDDEFLSEFKHDACKNDSIIYVEKTIRSATEVMDTVQEMKNCNLYLVGRTPDVKAMYILNRSDCPELGPVGNLLTSPNFPILASVLVVQQYRSESLVNSASDSGGGETESA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2931153 2934214 + CmaCh16G005690.1 Cma16g00569 311167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00569 799 Pfam Sodium/hydrogen exchanger family 42 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cma16g00569 799 PANTHER CATION/H(+) ANTIPORTER 18 7 790 - -
Cma16g00569 799 PANTHER CATION/H + ANTIPORTER 7 790 - -
Cma16g00569 799 Gene3D - 35 438 IPR038770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00436 Cma-Chr3:4586936 Cma16g00569 Cma-Chr16:2931153 0 dispersed
Cma07g00971 Cma-Chr7:4697257 Cma16g00569 Cma-Chr16:2931153 0 dispersed
Cma16g00567 Cma-Chr16:2919666 Cma16g00569 Cma-Chr16:2931153 0 dispersed
Cma16g00569 Cma-Chr16:2931153 Cma20g01053 Cma-Chr20:7858032 0 dispersed
Cma16g00568 Cma-Chr16:2924699 Cma16g00569 Cma-Chr16:2931153 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00569 - - csv:101223205 1392.87