Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00575 ATGGAGCAGAAGGGTTTGTTGCTGTCGGCGTTGAGTGTCGGCGTCGGAGTTGGAGTGGGGCTCGGATTAGCCACCGGACAGAGCGTCGTCACCAAATGGTCCGCCTCTAATTCTTCCTCTAACCTCATCACCGCCGACAAGCTCGAACAGGAAATGCTTAAACAGATTGTTGATGGCCGTCAAAGCAAAGTCACTTTTGAAGATTTCCCTTATTATCTCAGCGAACAAACACGAGTAGTATTAACAAGTGCGGCTTACGTGCATTTGAAACACGCTGAAGTATCTAAGTTCACTCGAAACCTCTCGCCTGCAAGCCGAGCCATCTTACTCTCTGGCCCAGCTGAACTTTATCAGCAAATGCTTGCCAAGGCATTGGCTCACTACTTCGAGGCCAAATTGTTGCTTTTAGATATCACTGACTTCTCCTTGAAGATTCAGAGCAAATATGGGACTTCTGTCAAGGAATCTGCTTTTAGAAGGTCTACCTCAGAGTCTACATTAGAGAAATTGTCTAGCTTATTTGGATCGTTTTCGATCCTTCCACCCCGGGAAGAACAAAGAACAGGTTCGTTGCGGAGGCAACGTAGTGGTGTGGAACTAGCGTCGTGGGGAAAGGAAGGATCTTCTAATCTTCCGAAACTTCGAAGAAATTCGTCTGCTGCTGCTAACATTATTAACCTCACGAACCAGTGCAATGTCGAGAAGTCAGCTTCCCTTAAGCACACGAGCAGCTGGGCGTTTGAGGAGAAACTGCTTATACAGTCACTATATAAGGTTCTTGTATACGTGTCGAAAGCGAGTCCGATTGTTTTATATCTTCGTGACGTAGATAGTTTCTTATCGACCTCAAATAGGATCTACAACTTGTTCCAAAAAATGCTACAAAAACTGTCTGGATCAATTTTGATACTCGGTTCGCGTACTATTGATCCGAGCAATGATTATATGGAGGTGGACGAGCGGCTCTCCGCTCTTTTTCCTTATAATATCGAGATCAGGCCACCCGAAGATGAATCTCAGCATGTCAGCTGGAAGTCTCAATTGGAAGAAGATATGAAAAAGATCAAGGTTCAGGACAACCGAAACCATATCATCGAAGTTCTTTCAGCAAATGATCTCGACTGTGATGATCTCGACTCGATCTGCGTTGCTGATACGATGGTTCTCAGTAACTACGTAGAAGAGATTGTAGTGTCTGCAGTTTCTTATCATCTAATGAACAACAAGGATCCCGAATACCGAAACGGAAAACTGATCATTTCGAGCAAGAGTTTGTCCCATGGATTGAGCATATTCCAAGCAGGAAAATCCACTGGCAAGAATTCAGTACAGCTTGAAGCACAAACTGAAGCTTCAAAGGACTCGGGAGCAGCGAAATCTGAAGTAAAAGCCGATACCACAGCTGCTGAAAACAGAACTGAAGCAGCAGCGGCTGCAGTGGCGAAAACCGAGGGAGAGATCGTTGTTCCAGCTGCAAAAGCCCCGGAAGTTCCACCAGACAATGAGTTCGAGAAACGCATTAGGCCGGAGGTCATACCAGCGAACGAGATTAATATTACATTTTCCGATATCGGGGCGATGGAGGAGATAAAAGATTCTCTTCAAGAACTTGTAATGCTTCCTTTACGAAGGCCAGATTTATTTCTCGGAGGTCTTTTGAAGCCATGTAGAGGCATATTATTGTTCGGACCGCCCGGGACTGGAAAGACTATGTTAGCCAAGGCCATAGCGAAAGAAGCTGGAGCAAGCTTCATTAATGTATCGATGTCGACCATAACTTCGAAATGGTTCGGAGAAGACGAGAAGAATGTTCGAGCTTTATTCACATTAGCAGCCAAAGTCTCTCCCACGATCATTTTTGTGGACGAGGTAGATAGTATGCTCGGACAGCGGACGAGAGTTGGCGAGCATGAGGCAATGAGGAAAATAAAGAACGAGTTCATGGCTCATTGGGATGGACTGTTGACAAAGCCAGGGGAGCGCGTGCTCGTTCTTGCAGCAACAAATAGGCCATTTGACCTCGACGAAGCCATCATACGTCGATTCGAGCGAAGAATAATGGTGGGGTTACCAACAGCAGAGAATAGAGAAATGATATTGACAACTCTGTTGGGGAAAGAAAAGGTGGAAGAAGGGCTAGACATGAAGGAGCTTGCTGCATTCACAGAAGGATATAGTGGAAGTGATCTCAAGAACTTCTGTATGACGGCTGCATATCGACCCGTTCGGGAGCTAATAAAGCAAGAAAGACTCAAGGATATGGAGAAAAAACGAAGGGCTGCTGAAGGGCAGAATAAGGCAGTAGGGGATGGAGACGGAGAAAGCAAGGAAGAAAGAGTTGCGGCGAGTTTTGCAGCGGAAGGATCGATGATGAGTGAATTGAAGCAATGGAATGAGTTATATGGGGAAGGAGGGTGTAGAAAGAAGCAACAGTTGAGTTATTTCCTGTGA 2451 45.65 MEQKGLLLSALSVGVGVGVGLGLATGQSVVTKWSASNSSSNLITADKLEQEMLKQIVDGRQSKVTFEDFPYYLSEQTRVVLTSAAYVHLKHAEVSKFTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDITDFSLKIQSKYGTSVKESAFRRSTSESTLEKLSSLFGSFSILPPREEQRTGSLRRQRSGVELASWGKEGSSNLPKLRRNSSAAANIINLTNQCNVEKSASLKHTSSWAFEEKLLIQSLYKVLVYVSKASPIVLYLRDVDSFLSTSNRIYNLFQKMLQKLSGSILILGSRTIDPSNDYMEVDERLSALFPYNIEIRPPEDESQHVSWKSQLEEDMKKIKVQDNRNHIIEVLSANDLDCDDLDSICVADTMVLSNYVEEIVVSAVSYHLMNNKDPEYRNGKLIISSKSLSHGLSIFQAGKSTGKNSVQLEAQTEASKDSGAAKSEVKADTTAAENRTEAAAAAVAKTEGEIVVPAAKAPEVPPDNEFEKRIRPEVIPANEINITFSDIGAMEEIKDSLQELVMLPLRRPDLFLGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMAHWDGLLTKPGERVLVLAATNRPFDLDEAIIRRFERRIMVGLPTAENREMILTTLLGKEKVEEGLDMKELAAFTEGYSGSDLKNFCMTAAYRPVRELIKQERLKDMEKKRRAAEGQNKAVGDGDGESKEERVAASFAAEGSMMSELKQWNELYGEGGCRKKQQLSYFL 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2963731 2969562 + CmaCh16G005750.1 Cma16g00575 311173

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00575 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 354 IPR027417 -
Cma16g00575 816 MobiDBLite consensus disorder prediction 755 780 - -
Cma16g00575 816 MobiDBLite consensus disorder prediction 448 468 - -
Cma16g00575 816 ProSitePatterns AAA-protein family signature. 662 681 IPR003960 GO:0005524|GO:0016887
Cma16g00575 816 CDD AAA 525 690 - -
Cma16g00575 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 756 IPR027417 -
Cma16g00575 816 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 816 - -
Cma16g00575 816 Pfam AAA+ lid domain 713 756 IPR041569 -
Cma16g00575 816 Gene3D - 518 783 IPR027417 -
Cma16g00575 816 SMART AAA_5 555 692 IPR003593 -
Cma16g00575 816 Pfam ATPase family associated with various cellular activities (AAA) 559 689 IPR003959 GO:0005524|GO:0016887
Cma16g00575 816 Gene3D - 691 778 - -
Cma16g00575 816 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 816 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00575 - - - csv:101213686 1369.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00575 Cma-Chr16:2963731 Cma18g00322 Cma-Chr18:1716278 1.59E-24 dispersed
Cma15g01059 Cma-Chr15:6706621 Cma16g00575 Cma-Chr16:2963731 0 wgd
Cma16g00575 Cma-Chr16:2963731 Cma02g01088 Cma-Chr2:6468535 0 wgd
Cma16g00575 Cma-Chr16:2963731 Cma04g00716 Cma-Chr4:3627520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00575 Cma_Chr16 FPKM 1.665718 2.199761 3.760351 3.66276 0.453476 0.41934 0.438003 8.533052 8.027781 7.989682