Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00576 ATGGAAAGCTTCAGCTTGCTCAAATACTGGAGAGGGGGCGGCGGTGCTACTCCTCCTGCTGTTGCTGCTGCTGCCACCGCTGATTTTGCTTTTAACGGATATTCCTCTGCTGCTGGCGCTGTCAGTGTTGTCACCGCCGTGCCGCAGAACCAGGCGGAAAGTGATGAGGAGAATGATGAGGATGATGGGCCGTTCTTTGATTTGGAGTTTGCTGTTCCTGATGAGGATGAGAGTCGAAAACAGGGGGGAAATGACGAGGGGAGGAGAAACTGTGCTGACGGAAGTGAGGAAGAAGAAGAAGAAGATGATGAAGATGATGAAGAAGAAGAAGATGGGGATACGGATGGTGAGAGAGAGTTCAACTTCACGCTGTCATCTGGCTCTAGCAACGAACATTCCGATGCCAATCTCACGTTTTCTCCTTCTGATGACTTGTTTTTCAAGGGAAAGCTTGTCCCAGTTGAAGCCTCCTCCAATGGCGGTTCTGAAACAAACGCCAGGCCGCAGCTTCGTGTCACATTGTTGAAATCAGCTGCCAAGTTTAGGGTATTCATGTCGGGTCTCAAGAGGTCGAAATCGAACGGGGAAAAGAAACCAGAGACAGATGGATCTGTGGGGGAAATGACCAAAACTGAGATGAAGGAAGAGACGACGGAAATCCCACCGGAGAAAAACGAGAACCAAGCGGGAAAAGAACAGAACCAGACGAAAAGTAAGCTTTTCGCTGTGAAACTTAAGGTGGAGGAAGTTCCGATCATGTCTCTGTTTACCAGAGACAACAGTTCAAGAGGCTCCGGAGGAACTACCAGCAACAGCAACAACAACAACAACAACAACAACAACAACAACAACAAACCCCAGAAACGAAGCTCCGATGAACTAACTTCGGAGGAAAATCGATTCTCCAAAGACGTAATAATGCAAAAGTACTTGAAGATGGTGAAGCCTCTGTACATTCGGGTTTCAAGGAGATACGGCGAGAAGTTCAGGCTATCCGGGCAGCTTATTTTGGGGGCAGCCGGAGCCAAGTCCGGTGCACCGCCACCCACCTCGCCGCCGTTGGAGAAACCCGTGACAGAGACACAGACACAGACAGAAGGTGTGCAAGTGCAAGCACCAACAACCACCGCCAACAGCAAGGGCAGGAACATGCCGGCTAAGCTAAGAGTAGTCTGCAAGCATTTGGGGAAAAGTCGGTCAGCTTCCTCCGCCGTAGCAGCGGCGCCACCAGGGATGGCTCCCTCGAGAAGGGACGATTCGCTTATCCAGCAACAAGACGGAATCCAGAGCGCGATTCTCCATTGCAAGAGATCCTTCAACGCATCTCGAGATTCAGAGTCTTCCCTGCTATCAAGGTCAGTAAGCGACACTCTGCGTGAGAAACCTTCAGATTTAACAGAAAAACAATGA 1410 50.21 MESFSLLKYWRGGGGATPPAVAAAATADFAFNGYSSAAGAVSVVTAVPQNQAESDEENDEDDGPFFDLEFAVPDEDESRKQGGNDEGRRNCADGSEEEEEEDDEDDEEEEDGDTDGEREFNFTLSSGSSNEHSDANLTFSPSDDLFFKGKLVPVEASSNGGSETNARPQLRVTLLKSAAKFRVFMSGLKRSKSNGEKKPETDGSVGEMTKTEMKEETTEIPPEKNENQAGKEQNQTKSKLFAVKLKVEEVPIMSLFTRDNSSRGSGGTTSNSNNNNNNNNNNNNKPQKRSSDELTSEENRFSKDVIMQKYLKMVKPLYIRVSRRYGEKFRLSGQLILGAAGAKSGAPPPTSPPLEKPVTETQTQTEGVQVQAPTTTANSKGRNMPAKLRVVCKHLGKSRSASSAVAAAPPGMAPSRRDDSLIQQQDGIQSAILHCKRSFNASRDSESSLLSRSVSDTLREKPSDLTEKQ 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2975322 2977698 + CmaCh16G005760.1 Cma16g00576 311174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00576 469 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 2-RELATED 1 465 IPR039619 GO:0005886
Cma16g00576 469 MobiDBLite consensus disorder prediction 95 116 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 442 456 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 119 140 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 48 144 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 53 71 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 256 297 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 399 419 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 72 94 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 440 469 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 187 237 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 340 383 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 191 226 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 256 289 - -
Cma16g00576 469 MobiDBLite consensus disorder prediction 356 382 - -
Cma16g00576 469 PANTHER MEMBRANE-ASSOCIATED KINASE REGULATOR 2-RELATED 1 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00576 - - - cmax:111483413 750.355
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00576 Cma-Chr16:2975322 Cma18g01284 Cma-Chr18:9917314 2.59E-21 dispersed
Cma15g01062 Cma-Chr15:6743489 Cma16g00576 Cma-Chr16:2975322 3.27E-17 wgd
Cma16g00089 Cma-Chr16:394656 Cma16g00576 Cma-Chr16:2975322 1.21E-22 wgd
Cma16g00576 Cma-Chr16:2975322 Cma02g01087 Cma-Chr2:6461382 4.25E-25 wgd
Cma16g00576 Cma-Chr16:2975322 Cma04g00717 Cma-Chr4:3640691 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g55 Blo02g01125 Blo03g00230 Bda06g00124 Bda08g00500 Bpe05g00664 Bpe07g00091 . . . Cmo16g00625 . . . . . Cpe14g00487 Cpe05g00634 . . . . . . . Cla07g00738 Cam07g0791 Cec07g0856 Cco07g0826 Clacu07g0772 Cmu07g0781 Cre07g1132 . . Cone14ag0046 . . . . Cme07g01608 . . Bda07g01911 . . . Bma05g00838 Bma12g00061 . Cmo02g01105 . . Cma16g00576 . . . . . . . . . . . . . . . . . . . Csa04g00618 Chy07g01194 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005486 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00576 Cma_Chr16 FPKM 3.907814 3.774999 4.019993 4.377419 6.077752 5.646584 6.091317 0.245672 0.345044 0.251901