Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00578 ATGGAAAAGGAAAGCTGGAGATATGTTCTTCTTCAAATCTTCATCCGGAGCAGTGCACCAGGAATCCCAGCCGGCGAGGAGGTCAAGAGAGGCGGCGACGGCGACGGCGCGATTGTCTCACTGATGGTGTGGAGGAAGTCACTGTTACTCACCTGTAACGGCTTCACAGTGATTGATTGTAACGGAAATATCGTATACAGAGTCGATAATTACACCGGACGGCCGGAGGAAGTGATTCTGATGGACGGCCTCGGAAACTCCGTCCTCACAATGTGCCGCTCCAAGAAGCTTGGACTAGCGGAGAACTGGTCCGTGTACGTAGGGGAAGTAGGAGGAGAAACTAGGGCTAGGAAGAAACCGATATGTCGAGTGAGGAAGAACATGAACATACTACATGTCGCTCCGAATGCGAAAGTGCTCGCATACGTATACGATTACAGAACCTCGGAGAAGAAGTATGCGTACAGTGTGGAAGGTTCGTACGGTCAGCGATCGTGCAAGGTTTTGGACGCGTCGAGGACAGTGGTGGCGGAGGTGAAGAGGAAGGAGGCGGTGAAAGGCGGCGTTTGTTTTGGGGCGGAGGTTTTCCTTCTGGTGATTCTTCCTGGTTTTGATCCCGGATTGGCTATGGCTCTGGTTTTAGCTCTGTATCAGATGTTCTCTTAG 666 51.65 MEKESWRYVLLQIFIRSSAPGIPAGEEVKRGGDGDGAIVSLMVWRKSLLLTCNGFTVIDCNGNIVYRVDNYTGRPEEVILMDGLGNSVLTMCRSKKLGLAENWSVYVGEVGGETRARKKPICRVRKNMNILHVAPNAKVLAYVYDYRTSEKKYAYSVEGSYGQRSCKVLDASRTVVAEVKRKEAVKGGVCFGAEVFLLVILPGFDPGLAMALVLALYQMFS 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2989374 2990696 + CmaCh16G005780.1 Cma16g00578 311176

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00578 221 PANTHER PROTEIN LURP-ONE-RELATED 17 34 220 - -
Cma16g00578 221 PANTHER - 34 220 IPR007612 -
Cma16g00578 221 SUPERFAMILY Tubby C-terminal domain-like 37 219 IPR025659 -
Cma16g00578 221 Pfam LURP-one-related 39 214 IPR007612 -
Cma16g00578 221 Gene3D - 37 221 IPR038595 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00578 - - - cmos:111447443 325.479
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00004 Cma-Chr14:34014 Cma16g00578 Cma-Chr16:2989374 4.39E-45 dispersed
Cma14g01349 Cma-Chr14:10492675 Cma16g00578 Cma-Chr16:2989374 2.52E-27 dispersed
Cma15g01216 Cma-Chr15:7693210 Cma16g00578 Cma-Chr16:2989374 7.73E-22 dispersed
Cma16g00578 Cma-Chr16:2989374 Cma17g00864 Cma-Chr17:6644769 2.97E-29 dispersed
Cma16g00578 Cma-Chr16:2989374 Cma04g00719 Cma-Chr4:3654614 2.20E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g52 . . . . . . . Bma14g00595 . Cmo16g00627 . . . . . Cpe14g00489 . . . . . . . . Cla07g00743 Cam07g0795 Cec07g0861 Cco07g0830 Clacu07g0776 Cmu07g0783 Cre07g1135 . . Cone6ag0816 Cone9ag0816 . . . Cme07g01610 . . . . . . . . . . . . Cma16g00578 . . . . . . . . . . . . . . . . . . . Csa04g00615 Chy07g01196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009392 0 1 0 3 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00578 Cma_Chr16 FPKM 0.667557 0.0 0.709936 1.013067 1.843972 1.32421 1.021399 0.933427 0.785885 1.513452