Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00579 ATGTTCTTCTCTGTGTTCAGATTGGTGTTTTCTGGCGATGGAGTTTTGAAGTCATTAGAGATGTTTGGCGGCTGTTGTGAATTGACTTCGCTCATGGGACCAGACGGCTCTGTTAGAACAGGGGTAACAATCGAGGAGGTTGAGTTGTGTGAGGCGGATCGCGGTTCTGCCCCTCCTAGCTATTCATTTCAGCATTTCAGCTCGTACGGTAGTAAAAAAGATGGGACGAGCTCTATCAATGATTTGGGTCCTGTTTCCTTAGATAAGGTTCCTGATGGAGCGGTTTTTAAGGATGGTGAAAATACATATGAAGATTTTGAAAGTAGGAACAAAAGAAGTCATTTGTCCACTTCAAGTCCAGGAGTACAGCCCCGTAAACCGTTAAAGGTGTCAAGGGGTAGTAGTAGTTTATGTTCTAAGAGGCCACGTGTGGTTCAATTGGAAGATCCTTTGTTCTTAAGTGGAGCTGATGACGTATCTGATAAGCTTGGATCATACCTTAAAAAGTGCAACTCTCATGAGAAAACTCAACTGTTGAAACAGAAGAGTAGCCTAAGCAGCAAGCGGGGTGATAAGAGAAATCTCAAGGTGTCATTGAAGACAAAGTTTGATTCATTCTCTACAAATGCTGGAAATGGCTCAGCTGCCGCAGGGAGCAGTTTTCATGGATTATACGGGCTGAAATCAGGTGCTCGTGATTTTACAAAGCTTACGGATGATCCACCGCTGAACGATATTCTTAATGGTAGTTATGACTATGCTAATTTAAGTAAAGACAAAGGTAAAAAAGACACAAATGTAAATGAATGTTTTCTGCAGTCAATTAGAAAAGCTTGTTCTGTTCTTCAGCTCCCATGGCCTGTCCGCCCGCAAAATATGGCAGAGTCAGAGAGTTGTTCTAACAGCAAACCGGATACAAGTCTAGTTAGTTCTGTTTCAAGCATGGAAGAAAAAGTGAATTTTGATGTAAAAGAACTTAGTGCAACAGATTCACCTTCATTAAACAAGGTGGAAGATGCCTGCGACAATTCTGAACCTTTGACCAATGCACTTGATTTTAAATTATACAAACCTGATCACATGTTCATGAAATTGGGCCTTCCTATACCAAAGGACTTGAATTCTTTGCTCCAGGATGCTAGCAAGTCCTCTGTATCTTCAAACAATGCAACAGATTTACGTTCAGCAAAGCAACAATCTCGTCGAGCTATGTTGCAACCATTTGCATGGTCACATTCTTTTAATGGGCACTCTAAAGCAAATTCAGATTCATCCAAGTTTTCTGCCAATAGGACCACATGTCTTGGTAGGTGGTGGCGAGTTCGAAACTTTTCCAATATACCTAGTGCTACTGCTGATTGTTTTACGAAAGACTTGGAATCGTTGACTTTTAACCAGAGTTTATTTCCTTCAACAATGAGAGTTGTTGGTCCTGATGATGGAAGGTCCTCTATATCTGTTAATCATCATCAATGTGGATGGGATTCCCTGTCTTCTGCAACTTGTTCGAAAACTTCCTCTGTGCTTGTGGAATCTCGAGGGAAGATGAATAACGAGGCAAATGAGCAGCAGTGTCCAAGAGTAATGGCTGCTGCTCAAACTCTGTACGATATTGCAACTTCTGCTGCATTGAGGCAAAACATAGATGGGATGGTAAGGTGGCCAAAAAAGGCATCACAAAAGTCCATGAGAGCTCGCAAGTTGAAATCAGAGGAAACTGAAGAATTATATACCACGCCTACAACATATGGATTGTGGTCCAACAATTCGATCAAGAATGAAGGCCATCATGCTCATCCCTCGAAGAAGCCAAAGCTCGGAACAACAGAGAGCAGAAGAGACGTTGCTCAGACCAATTGTAAAAGAGGACCATTGAATTGGACTACACCCCGGTCAAGTAGATCGTCACCCAGTAAGTTCATTAGAGATTCGATTTCAGAAGCTAAACCTTCAACCGCAGGTGCCATAAAACAATCATCATCTATGATGCCTCCTCCAGCAACTCTTTTGTGCAAGGCTGGCGAGGGTCAACAAAACACACGGAAGTTAATGCTCATGGATTGGAAAAGAGGGGGATGA 2079 42.28 MFFSVFRLVFSGDGVLKSLEMFGGCCELTSLMGPDGSVRTGVTIEEVELCEADRGSAPPSYSFQHFSSYGSKKDGTSSINDLGPVSLDKVPDGAVFKDGENTYEDFESRNKRSHLSTSSPGVQPRKPLKVSRGSSSLCSKRPRVVQLEDPLFLSGADDVSDKLGSYLKKCNSHEKTQLLKQKSSLSSKRGDKRNLKVSLKTKFDSFSTNAGNGSAAAGSSFHGLYGLKSGARDFTKLTDDPPLNDILNGSYDYANLSKDKGKKDTNVNECFLQSIRKACSVLQLPWPVRPQNMAESESCSNSKPDTSLVSSVSSMEEKVNFDVKELSATDSPSLNKVEDACDNSEPLTNALDFKLYKPDHMFMKLGLPIPKDLNSLLQDASKSSVSSNNATDLRSAKQQSRRAMLQPFAWSHSFNGHSKANSDSSKFSANRTTCLGRWWRVRNFSNIPSATADCFTKDLESLTFNQSLFPSTMRVVGPDDGRSSISVNHHQCGWDSLSSATCSKTSSVLVESRGKMNNEANEQQCPRVMAAAQTLYDIATSAALRQNIDGMVRWPKKASQKSMRARKLKSEETEELYTTPTTYGLWSNNSIKNEGHHAHPSKKPKLGTTESRRDVAQTNCKRGPLNWTTPRSSRSSPSKFIRDSISEAKPSTAGAIKQSSSMMPPPATLLCKAGEGQQNTRKLMLMDWKRGG 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2991629 2997317 - CmaCh16G005790.1 Cma16g00579 311177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00579 692 MobiDBLite consensus disorder prediction 621 642 - -
Cma16g00579 692 PANTHER F22C12.19 30 691 - -
Cma16g00579 692 MobiDBLite consensus disorder prediction 595 610 - -
Cma16g00579 692 MobiDBLite consensus disorder prediction 113 135 - -
Cma16g00579 692 MobiDBLite consensus disorder prediction 586 665 - -
Cma16g00579 692 MobiDBLite consensus disorder prediction 651 665 - -
Cma16g00579 692 MobiDBLite consensus disorder prediction 103 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00579 - - - csv:101222259 1059.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00579 Cma-Chr16:2991629 Cma04g00721 Cma-Chr4:3657648 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g51 Blo02g01124 Blo03g00229 Bda06g00123 Bda08g00501 Bpe05g00663 Bpe07g00092 . . . Cmo16g00629 . . . . . Cpe14g00490 . . . . . . . . Cla07g00744 Cam07g0796 Cec07g0862 Cco07g0831 Clacu07g0777 Cmu07g0784 Cre07g1136 Cone8ag0273 Cone12ag0280 . . . . . Cme07g01611 . . . . . . Bma05g00837 Bma12g00062 . . . . Cma16g00579 . . . . . . . . . . . . . . . . . . . Csa04g00614 Chy07g01197 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003101 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00579 Cma_Chr16 FPKM 4.236786 4.710443 7.115946 6.873616 8.709879 7.939292 7.452672 6.915773 6.870177 7.623551