Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma16g00580 ATGGAGGATTGGGATTTGCAAGCAATTGTAAAAGGATGCAATGGATCAATTACTTCTTCAAGAACAGCAACGCTCATGGAAGATCCAAATTTGGTCTCTTTTTTGATCGAAAAAGATGAACTTTTAAGTTCTTGTTCAGTGTATGATGAGTTTGAAGGGTTGTTTGGAAGCTCCGATGACTCTGCCTCTGCCTCTGCCTCTGCCGCCGCCATTTCTGGTCTTCTCAGAGAGCTTAAGGAACCAGAAAAGCTTCATCGGAAGAGCCAAATCGCTGCAACTAAACAGAAACAGAGCAAGAAAAGTCGGCAAAACAGAGTAGTGAAAGAGGTGAAAGCAGAGGGGGTGTGTTCGGATTCATGGGGATGGCGGAAATATGGACAGAAACCAATTAAAGGGTCGCCATATCCGAGAAGCTATTACCGATGCAGCTCCTCCAAAGGATGCTCTGCTAGAAAGCAAGTTGAACGGAGCCTCTCCGATCCCGGCGCCTTCGTTATCACCTACACGGCTGAGCACAACCACGCTGAGCCTACTCGCCGTAACGCCCTTGCCGGGACCACCAGGAAGAAGTTTCCGGCGCCGGAAAACCCGAGGTTGGATATGTCTGTGGCGTCCGTTGAAGAAGAACAGCCAATGGAGGGAGTTATTATGGATTTGCCATTCGAATTCTTTTCTGGTTTGGAGGATTTTCTTTTTGAATGA 702 47.44 MEDWDLQAIVKGCNGSITSSRTATLMEDPNLVSFLIEKDELLSSCSVYDEFEGLFGSSDDSASASASAAAISGLLRELKEPEKLHRKSQIAATKQKQSKKSRQNRVVKEVKAEGVCSDSWGWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSLSDPGAFVITYTAEHNHAEPTRRNALAGTTRKKFPAPENPRLDMSVASVEEEQPMEGVIMDLPFEFFSGLEDFLFE 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2998775 2999747 - CmaCh16G005800.1 Cma16g00580 311178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma16g00580 233 ProSiteProfiles WRKY domain profile. 111 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00580 233 SUPERFAMILY WRKY DNA-binding domain 114 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00580 233 SMART WRKY_cls 116 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00580 233 Gene3D WRKY domain 92 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma16g00580 233 Pfam WRKY DNA -binding domain 118 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma16g00580 233 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 206 IPR044810 GO:0003700
Cma16g00580 233 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 206 - -
Cma16g00580 233 MobiDBLite consensus disorder prediction 183 202 - -
Cma16g00580 233 MobiDBLite consensus disorder prediction 82 107 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma16g00580 K13426 WRKY29; WRKY transcription factor 29 K13425 cmax:111483427 431.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00580 Cma-Chr16:2998775 Cma18g00530 Cma-Chr18:3291663 3.45E-38 dispersed
Cma15g01067 Cma-Chr15:6759134 Cma16g00580 Cma-Chr16:2998775 3.66E-17 wgd
Cma16g00580 Cma-Chr16:2998775 Cma02g01084 Cma-Chr2:6451561 1.46E-39 wgd
Cma16g00580 Cma-Chr16:2998775 Cma04g00724 Cma-Chr4:3682891 1.96E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g45 . . . . Bpe05g00659 . . . . Cmo16g00630 . . Car02g00702 . . Cpe14g00491 Cpe05g00637 . . . . . . . Cla07g00748 Cam07g0800 Cec07g0865 Cco07g0839 Clacu07g0780 Cmu07g0788 Cre07g1142 . . Cone6ag0812 Cone9ag0811 . . . Cme07g01614 . . Bda07g01906 . . . Bma05g00832 . . Cmo02g01102 Cmo15g01124 . Cma16g00580 . . . . . . . . . . . . . . . . . . . Csa04g00611 Chy07g01200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007717 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36547 PF03106 WRKY 4.80E-25 CL0274 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma16g00580 Cma_Chr16 FPKM 8.330377 12.373765 0.0 0.0 0.903041 0.52938 0.766031 0.0 0.0 0.0